Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 FLJ16779-201ENST00000612722 7638 ntBASIC14.58□□□□□ -0.08
SKA3Q8IX90 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 AC023824.1-201ENST00000562945 2975 ntBASIC14.58□□□□□ -0.08
SKA3Q8IX90 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 AC099063.4-201ENST00000641099 1602 ntBASIC14.57□□□□□ -0.08
SKA3Q8IX90 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 AC002347.1-201ENST00000569543 541 ntBASIC14.57□□□□□ -0.08
SKA3Q8IX90 AP002472.1-201ENST00000577490 586 ntBASIC14.57□□□□□ -0.08
SKA3Q8IX90 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 AC021097.1-201ENST00000607902 574 ntBASIC14.57□□□□□ -0.08
SKA3Q8IX90 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 GGT3P-204ENST00000453783 1664 ntBASIC14.57□□□□□ -0.08
SKA3Q8IX90 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.57□□□□□ -0.08
SKA3Q8IX90 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 GPAA1P2-202ENST00000606848 1787 ntBASIC14.57□□□□□ -0.08
SKA3Q8IX90 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SKA3Q8IX90 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AC068587.6-202ENST00000641839 5619 ntBASIC14.56□□□□□ -0.08
SKA3Q8IX90 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AC092474.2-201ENST00000424288 719 ntBASIC14.56□□□□□ -0.08
SKA3Q8IX90 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms