Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 FRMD8P1-201ENST00000440433 1524 ntBASIC10.2□□□□□ -0.78
LINC00643Q86TS7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC10.2□□□□□ -0.78
LINC00643Q86TS7 HLA-A-209ENST00000638375 975 ntBASIC10.2□□□□□ -0.78
LINC00643Q86TS7 LOX-206ENST00000639739 1626 ntTSL 5 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 NUTM2HP-201ENST00000442076 2498 ntBASIC10.19□□□□□ -0.78
LINC00643Q86TS7 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 INVS-201ENST00000262456 2968 ntTSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 RPS2P52-201ENST00000469610 820 ntBASIC10.19□□□□□ -0.78
LINC00643Q86TS7 TERF1P5-201ENST00000477545 1207 ntBASIC10.19□□□□□ -0.78
LINC00643Q86TS7 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 AC027682.1-201ENST00000562846 899 ntBASIC10.19□□□□□ -0.78
LINC00643Q86TS7 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 AC069544.1-201ENST00000609399 999 ntBASIC10.19□□□□□ -0.78
LINC00643Q86TS7 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms