Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.76■□□□□ 0.59
SH3RF1Q7Z6J0 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 AC241585.1-201ENST00000433527 519 ntBASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 CYP2A7P1-201ENST00000595391 815 ntBASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 AL009183.1-201ENST00000603760 355 ntBASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 AL353732.1-201ENST00000569618 1459 ntBASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SH3RF1Q7Z6J0 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 PCDHA1-201ENST00000378133 2726 ntBASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 MIR4453-201ENST00000584019 89 ntBASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF1Q7Z6J0 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 AC079328.2-201ENST00000561241 3354 ntBASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF1Q7Z6J0 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms