Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 AC026954.1-201ENST00000429771 1293 ntBASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 AL355864.2-201ENST00000447420 863 ntBASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 C2orf69P2-201ENST00000562032 1123 ntBASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 CLUHP6-201ENST00000580789 941 ntBASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 AL691432.1-201ENST00000596308 1422 ntBASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC21.88■■□□□ 1.09
KRT28Q7Z3Y7 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 PKIG-203ENST00000372887 769 ntTSL 3 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 TARDBPP1-201ENST00000442013 1203 ntBASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 YBX1P6-201ENST00000442962 1002 ntBASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 ELP6-209ENST00000446787 894 ntTSL 3 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 AC009542.2-202ENST00000619004 1067 ntBASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
KRT28Q7Z3Y7 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 AC004987.2-201ENST00000395959 1148 ntBASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 BAATP1-201ENST00000412284 1225 ntBASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 EEF1DP4-201ENST00000446006 880 ntBASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 DERL2-202ENST00000570848 657 ntTSL 5 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 AC244669.2-201ENST00000612320 853 ntBASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 AC006538.1-201ENST00000567905 1585 ntBASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 MSTO2P-201ENST00000314835 1709 ntBASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 AMT-206ENST00000458307 1860 ntTSL 2 BASIC21.86■■□□□ 1.09
KRT28Q7Z3Y7 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 INTS4P2-202ENST00000614726 2019 ntBASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 ZBTB12BP-201ENST00000314232 1122 ntBASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
KRT28Q7Z3Y7 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms