Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 AC006538.1-201ENST00000567905 1585 ntBASIC17.4■□□□□ 0.38
USP41Q3LFD5 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP41Q3LFD5 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USP41Q3LFD5 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 GGT4P-201ENST00000623672 1708 ntBASIC17.39■□□□□ 0.37
USP41Q3LFD5 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.39■□□□□ 0.37
USP41Q3LFD5 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
USP41Q3LFD5 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.39■□□□□ 0.37
USP41Q3LFD5 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 HLA-J-202ENST00000469281 1241 ntBASIC17.39■□□□□ 0.37
USP41Q3LFD5 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.39■□□□□ 0.37
USP41Q3LFD5 RN7SL618P-201ENST00000477850 296 ntBASIC17.39■□□□□ 0.37
USP41Q3LFD5 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 AC135586.1-201ENST00000539323 574 ntBASIC17.39■□□□□ 0.37
USP41Q3LFD5 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.39■□□□□ 0.37
USP41Q3LFD5 AL596325.1-201ENST00000563991 1082 ntBASIC17.39■□□□□ 0.37
USP41Q3LFD5 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.39■□□□□ 0.37
USP41Q3LFD5 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
USP41Q3LFD5 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 AL391005.1-201ENST00000623953 2435 ntBASIC17.39■□□□□ 0.37
USP41Q3LFD5 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
USP41Q3LFD5 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP41Q3LFD5 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 RN7SL692P-201ENST00000464677 288 ntBASIC17.38■□□□□ 0.37
USP41Q3LFD5 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.38■□□□□ 0.37
USP41Q3LFD5 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.38■□□□□ 0.37
USP41Q3LFD5 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.38■□□□□ 0.37
USP41Q3LFD5 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.38■□□□□ 0.37
USP41Q3LFD5 AC004840.1-201ENST00000636359 365 ntBASIC17.38■□□□□ 0.37
USP41Q3LFD5 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USP41Q3LFD5 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP41Q3LFD5 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
USP41Q3LFD5 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP41Q3LFD5 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
USP41Q3LFD5 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP41Q3LFD5 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP41Q3LFD5 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
USP41Q3LFD5 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
USP41Q3LFD5 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP41Q3LFD5 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP41Q3LFD5 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP41Q3LFD5 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.37■□□□□ 0.37
USP41Q3LFD5 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.37■□□□□ 0.37
USP41Q3LFD5 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.37■□□□□ 0.37
USP41Q3LFD5 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP41Q3LFD5 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
USP41Q3LFD5 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms