Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL662890.1-201ENST00000396818 632 ntBASIC17.05■□□□□ 0.32
CHD9Q3L8U1 AL096828.3-201ENST00000615354 462 ntBASIC17.05■□□□□ 0.32
CHD9Q3L8U1 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 AC009053.2-201ENST00000563701 2365 ntBASIC17.05■□□□□ 0.32
CHD9Q3L8U1 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHD9Q3L8U1 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 AL391256.1-201ENST00000443260 1855 ntBASIC17.04■□□□□ 0.32
CHD9Q3L8U1 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 AC134915.1-201ENST00000426461 574 ntBASIC17.04■□□□□ 0.32
CHD9Q3L8U1 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 LBH-202ENST00000401506 485 ntTSL 3 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 MIR4741-201ENST00000579822 90 ntBASIC17.04■□□□□ 0.32
CHD9Q3L8U1 MIR5572-201ENST00000583188 137 ntBASIC17.04■□□□□ 0.32
CHD9Q3L8U1 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.04■□□□□ 0.32
CHD9Q3L8U1 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 AC012441.1-201ENST00000446669 685 ntBASIC17.03■□□□□ 0.32
CHD9Q3L8U1 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 LDHBP1-201ENST00000455730 1119 ntBASIC17.03■□□□□ 0.32
CHD9Q3L8U1 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 AC104596.2-201ENST00000512793 793 ntBASIC17.03■□□□□ 0.32
CHD9Q3L8U1 AP006547.1-201ENST00000563435 692 ntBASIC17.03■□□□□ 0.32
CHD9Q3L8U1 MIR4321-201ENST00000592276 80 ntBASIC17.03■□□□□ 0.32
CHD9Q3L8U1 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.03■□□□□ 0.32
CHD9Q3L8U1 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.03■□□□□ 0.32
CHD9Q3L8U1 FO393414.2-201ENST00000405153 598 ntBASIC17.03■□□□□ 0.32
CHD9Q3L8U1 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHD9Q3L8U1 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 RPL17P11-201ENST00000417593 544 ntBASIC17.02■□□□□ 0.32
CHD9Q3L8U1 FNTAP2-201ENST00000430308 634 ntBASIC17.02■□□□□ 0.32
CHD9Q3L8U1 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 RN7SL720P-201ENST00000488178 304 ntBASIC17.02■□□□□ 0.32
CHD9Q3L8U1 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 AC124947.2-201ENST00000547118 1133 ntBASIC17.02■□□□□ 0.32
CHD9Q3L8U1 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.02■□□□□ 0.32
CHD9Q3L8U1 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.02■□□□□ 0.31
CHD9Q3L8U1 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms