Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.34■□□□□ 0.05
RFX4Q33E94 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.34■□□□□ 0.05
RFX4Q33E94 AC104819.1-201ENST00000504587 486 ntBASIC15.34■□□□□ 0.05
RFX4Q33E94 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC15.34■□□□□ 0.05
RFX4Q33E94 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.34■□□□□ 0.05
RFX4Q33E94 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.34■□□□□ 0.05
RFX4Q33E94 MIR5100-201ENST00000579544 119 ntBASIC15.34■□□□□ 0.05
RFX4Q33E94 MIR3180-1-201ENST00000580374 94 ntBASIC15.34■□□□□ 0.05
RFX4Q33E94 MIR3180-3-201ENST00000584616 94 ntBASIC15.34■□□□□ 0.05
RFX4Q33E94 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX4Q33E94 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.34■□□□□ 0.05
RFX4Q33E94 AL590326.2-201ENST00000625139 305 ntBASIC15.34■□□□□ 0.05
RFX4Q33E94 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
RFX4Q33E94 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.34■□□□□ 0.05
RFX4Q33E94 AC079776.2-201ENST00000641154 1609 ntBASIC15.34■□□□□ 0.05
RFX4Q33E94 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX4Q33E94 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX4Q33E94 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
RFX4Q33E94 AL365209.1-201ENST00000624418 6473 ntBASIC15.34■□□□□ 0.05
RFX4Q33E94 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX4Q33E94 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX4Q33E94 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX4Q33E94 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX4Q33E94 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX4Q33E94 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX4Q33E94 KRT8P39-201ENST00000396270 1433 ntBASIC15.34■□□□□ 0.05
RFX4Q33E94 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
RFX4Q33E94 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX4Q33E94 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.33■□□□□ 0.05
RFX4Q33E94 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RFX4Q33E94 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RFX4Q33E94 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
RFX4Q33E94 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RFX4Q33E94 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
RFX4Q33E94 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
RFX4Q33E94 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
RFX4Q33E94 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.33■□□□□ 0.04
RFX4Q33E94 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.33■□□□□ 0.04
RFX4Q33E94 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX4Q33E94 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.33■□□□□ 0.04
RFX4Q33E94 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX4Q33E94 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.33■□□□□ 0.04
RFX4Q33E94 AP000867.3-201ENST00000524675 377 ntBASIC15.33■□□□□ 0.04
RFX4Q33E94 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX4Q33E94 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.33■□□□□ 0.04
RFX4Q33E94 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.33■□□□□ 0.04
RFX4Q33E94 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC15.33■□□□□ 0.04
RFX4Q33E94 AC087388.1-201ENST00000571370 1112 ntBASIC15.33■□□□□ 0.04
RFX4Q33E94 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX4Q33E94 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.33■□□□□ 0.04
RFX4Q33E94 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX4Q33E94 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.33■□□□□ 0.04
RFX4Q33E94 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.33■□□□□ 0.04
RFX4Q33E94 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.33■□□□□ 0.04
RFX4Q33E94 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 REXO1L8P-201ENST00000604378 1897 ntBASIC15.33■□□□□ 0.04
RFX4Q33E94 PCGF3-213ENST00000620529 1899 ntBASIC15.33■□□□□ 0.04
RFX4Q33E94 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RFX4Q33E94 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.33■□□□□ 0.04
RFX4Q33E94 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX4Q33E94 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.33■□□□□ 0.04
RFX4Q33E94 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX4Q33E94 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX4Q33E94 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.32■□□□□ 0.04
RFX4Q33E94 AC016027.1-202ENST00000607927 1699 ntBASIC15.32■□□□□ 0.04
RFX4Q33E94 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.32■□□□□ 0.04
RFX4Q33E94 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX4Q33E94 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.32■□□□□ 0.04
RFX4Q33E94 LINC02228-204ENST00000642115 2962 ntBASIC15.32■□□□□ 0.04
RFX4Q33E94 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RFX4Q33E94 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX4Q33E94 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.32■□□□□ 0.04
RFX4Q33E94 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.32■□□□□ 0.04
RFX4Q33E94 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX4Q33E94 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RFX4Q33E94 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX4Q33E94 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX4Q33E94 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX4Q33E94 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
RFX4Q33E94 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
RFX4Q33E94 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
RFX4Q33E94 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RFX4Q33E94 TERC-201ENST00000602385 541 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms