Protein–RNA interactions for Protein: Q2M329

CCDC96, Coiled-coil domain-containing protein 96, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC96Q2M329 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC96Q2M329 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC96Q2M329 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC96Q2M329 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CCDC96Q2M329 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC96Q2M329 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC96Q2M329 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC96Q2M329 PCGF3-213ENST00000620529 1899 ntBASIC19.11■□□□□ 0.65
CCDC96Q2M329 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 FO538757.1-201ENST00000623083 1397 ntBASIC19.11■□□□□ 0.65
CCDC96Q2M329 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 AC093724.1-201ENST00000448659 1027 ntBASIC19.11■□□□□ 0.65
CCDC96Q2M329 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 AC098859.1-201ENST00000502915 1238 ntBASIC19.11■□□□□ 0.65
CCDC96Q2M329 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 AC140878.1-201ENST00000565277 250 ntBASIC19.11■□□□□ 0.65
CCDC96Q2M329 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC96Q2M329 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC96Q2M329 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC96Q2M329 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CCDC96Q2M329 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC96Q2M329 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC96Q2M329 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC96Q2M329 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC96Q2M329 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC96Q2M329 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 GGT3P-204ENST00000453783 1664 ntBASIC19.09■□□□□ 0.65
CCDC96Q2M329 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC96Q2M329 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 AC069120.2-201ENST00000524091 540 ntBASIC19.09■□□□□ 0.65
CCDC96Q2M329 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC96Q2M329 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC96Q2M329 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC96Q2M329 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC96Q2M329 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms