Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.41■□□□□ 0.22
XRCC1P18887 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.41■□□□□ 0.22
XRCC1P18887 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.41■□□□□ 0.22
XRCC1P18887 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.41■□□□□ 0.22
XRCC1P18887 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.41■□□□□ 0.22
XRCC1P18887 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
XRCC1P18887 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.41■□□□□ 0.22
XRCC1P18887 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.41■□□□□ 0.22
XRCC1P18887 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.41■□□□□ 0.22
XRCC1P18887 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
XRCC1P18887 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
XRCC1P18887 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
XRCC1P18887 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 TSPY26P-202ENST00000565928 3884 ntBASIC16.41■□□□□ 0.22
XRCC1P18887 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.41■□□□□ 0.22
XRCC1P18887 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
XRCC1P18887 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
XRCC1P18887 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
XRCC1P18887 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.41■□□□□ 0.22
XRCC1P18887 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
XRCC1P18887 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
XRCC1P18887 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.4■□□□□ 0.22
XRCC1P18887 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
XRCC1P18887 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.4■□□□□ 0.22
XRCC1P18887 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
XRCC1P18887 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
XRCC1P18887 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.4■□□□□ 0.22
XRCC1P18887 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
XRCC1P18887 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
XRCC1P18887 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.4■□□□□ 0.22
XRCC1P18887 SNHG9-202ENST00000564014 471 ntBASIC16.4■□□□□ 0.22
XRCC1P18887 MPDU1-223ENST00000582151 728 ntBASIC16.4■□□□□ 0.22
XRCC1P18887 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
XRCC1P18887 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
XRCC1P18887 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
XRCC1P18887 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.4■□□□□ 0.22
XRCC1P18887 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.4■□□□□ 0.22
XRCC1P18887 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
XRCC1P18887 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.4■□□□□ 0.22
XRCC1P18887 SLC22A20-204ENST00000530038 1673 ntBASIC16.4■□□□□ 0.22
XRCC1P18887 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.4■□□□□ 0.22
XRCC1P18887 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
XRCC1P18887 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.4■□□□□ 0.22
XRCC1P18887 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
XRCC1P18887 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
XRCC1P18887 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
XRCC1P18887 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
XRCC1P18887 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
XRCC1P18887 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.39■□□□□ 0.21
XRCC1P18887 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.39■□□□□ 0.21
XRCC1P18887 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 AC087641.1-201ENST00000557561 1021 ntBASIC16.39■□□□□ 0.21
XRCC1P18887 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.39■□□□□ 0.21
XRCC1P18887 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.39■□□□□ 0.21
XRCC1P18887 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.39■□□□□ 0.21
XRCC1P18887 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.39■□□□□ 0.21
XRCC1P18887 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.39■□□□□ 0.21
XRCC1P18887 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.39■□□□□ 0.21
XRCC1P18887 AP001350.2-201ENST00000625104 1094 ntBASIC16.39■□□□□ 0.21
XRCC1P18887 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms