Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.23
SHOX2O60902 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 HLA-F-220ENST00000434407 884 ntBASIC16.46■□□□□ 0.23
SHOX2O60902 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 AC034232.1-201ENST00000506026 1064 ntBASIC16.46■□□□□ 0.23
SHOX2O60902 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.46■□□□□ 0.23
SHOX2O60902 MIR4492-201ENST00000581627 80 ntBASIC16.46■□□□□ 0.23
SHOX2O60902 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.46■□□□□ 0.23
SHOX2O60902 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SHOX2O60902 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SHOX2O60902 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SHOX2O60902 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SHOX2O60902 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
SHOX2O60902 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SHOX2O60902 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SHOX2O60902 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.46■□□□□ 0.22
SHOX2O60902 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
SHOX2O60902 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.46■□□□□ 0.22
SHOX2O60902 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
SHOX2O60902 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SHOX2O60902 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SHOX2O60902 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.45■□□□□ 0.22
SHOX2O60902 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.45■□□□□ 0.22
SHOX2O60902 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SHOX2O60902 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC16.45■□□□□ 0.22
SHOX2O60902 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 AC140479.7-201ENST00000636301 2332 ntBASIC16.45■□□□□ 0.22
SHOX2O60902 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
SHOX2O60902 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 FAM220CP-201ENST00000395253 831 ntBASIC16.45■□□□□ 0.22
SHOX2O60902 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.45■□□□□ 0.22
SHOX2O60902 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.45■□□□□ 0.22
SHOX2O60902 GCSHP2-201ENST00000560971 527 ntBASIC16.45■□□□□ 0.22
SHOX2O60902 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.45■□□□□ 0.22
SHOX2O60902 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.45■□□□□ 0.22
SHOX2O60902 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
SHOX2O60902 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.45■□□□□ 0.22
SHOX2O60902 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
SHOX2O60902 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
SHOX2O60902 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SHOX2O60902 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
SHOX2O60902 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SHOX2O60902 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.45■□□□□ 0.22
SHOX2O60902 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.45■□□□□ 0.22
SHOX2O60902 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SHOX2O60902 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC16.44■□□□□ 0.22
SHOX2O60902 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC16.44■□□□□ 0.22
SHOX2O60902 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.44■□□□□ 0.22
SHOX2O60902 AC007686.3-201ENST00000619017 3487 ntBASIC16.44■□□□□ 0.22
SHOX2O60902 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC16.44■□□□□ 0.22
SHOX2O60902 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SHOX2O60902 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 KRT8P44-201ENST00000441609 1350 ntBASIC16.44■□□□□ 0.22
SHOX2O60902 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 ECEL1P3-201ENST00000427961 737 ntBASIC16.44■□□□□ 0.22
SHOX2O60902 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.44■□□□□ 0.22
SHOX2O60902 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.44■□□□□ 0.22
SHOX2O60902 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHOX2O60902 AC079781.5-202ENST00000641784 3743 ntBASIC16.44■□□□□ 0.22
SHOX2O60902 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms