Protein–RNA interactions for Protein: O43731

KDELR3, ER lumen protein-retaining receptor 3, humanhuman

Predictions only

Length 214 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDELR3O43731 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
KDELR3O43731 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
KDELR3O43731 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.59■□□□□ 0.25
KDELR3O43731 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
KDELR3O43731 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 AC092364.2-201ENST00000596710 2692 ntBASIC16.59■□□□□ 0.25
KDELR3O43731 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.59■□□□□ 0.25
KDELR3O43731 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.59■□□□□ 0.25
KDELR3O43731 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.59■□□□□ 0.25
KDELR3O43731 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.59■□□□□ 0.25
KDELR3O43731 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.59■□□□□ 0.25
KDELR3O43731 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.59■□□□□ 0.25
KDELR3O43731 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
KDELR3O43731 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.59■□□□□ 0.25
KDELR3O43731 MIR4453-201ENST00000584019 89 ntBASIC16.59■□□□□ 0.25
KDELR3O43731 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 AC003101.2-201ENST00000612557 442 ntBASIC16.59■□□□□ 0.25
KDELR3O43731 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.59■□□□□ 0.25
KDELR3O43731 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.59■□□□□ 0.25
KDELR3O43731 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.59■□□□□ 0.25
KDELR3O43731 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.59■□□□□ 0.25
KDELR3O43731 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.59■□□□□ 0.25
KDELR3O43731 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.59■□□□□ 0.25
KDELR3O43731 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
KDELR3O43731 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.59■□□□□ 0.25
KDELR3O43731 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KDELR3O43731 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.59■□□□□ 0.25
KDELR3O43731 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
KDELR3O43731 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
KDELR3O43731 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
KDELR3O43731 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.58■□□□□ 0.25
KDELR3O43731 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
KDELR3O43731 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
KDELR3O43731 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
KDELR3O43731 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.58■□□□□ 0.24
KDELR3O43731 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.58■□□□□ 0.24
KDELR3O43731 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.58■□□□□ 0.24
KDELR3O43731 CNN2P2-201ENST00000443536 909 ntBASIC16.58■□□□□ 0.24
KDELR3O43731 CNN2P3-201ENST00000450201 906 ntBASIC16.58■□□□□ 0.24
KDELR3O43731 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.58■□□□□ 0.24
KDELR3O43731 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.58■□□□□ 0.24
KDELR3O43731 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 AL136317.3-201ENST00000618497 906 ntBASIC16.58■□□□□ 0.24
KDELR3O43731 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.58■□□□□ 0.24
KDELR3O43731 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.58■□□□□ 0.24
KDELR3O43731 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.58■□□□□ 0.24
KDELR3O43731 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KDELR3O43731 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.58■□□□□ 0.24
KDELR3O43731 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.58■□□□□ 0.24
KDELR3O43731 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.58■□□□□ 0.24
KDELR3O43731 AL662844.4-201ENST00000606367 2838 ntBASIC16.58■□□□□ 0.24
KDELR3O43731 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.58■□□□□ 0.24
KDELR3O43731 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
KDELR3O43731 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
KDELR3O43731 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
KDELR3O43731 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
KDELR3O43731 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.57■□□□□ 0.24
KDELR3O43731 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
KDELR3O43731 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.57■□□□□ 0.24
KDELR3O43731 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
KDELR3O43731 AC006449.5-201ENST00000610658 2098 ntBASIC16.57■□□□□ 0.24
KDELR3O43731 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
KDELR3O43731 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.57■□□□□ 0.24
KDELR3O43731 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KDELR3O43731 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
KDELR3O43731 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.57■□□□□ 0.24
KDELR3O43731 MTHFR-217ENST00000641820 1569 ntBASIC16.57■□□□□ 0.24
KDELR3O43731 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.57■□□□□ 0.24
KDELR3O43731 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
KDELR3O43731 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.57■□□□□ 0.24
KDELR3O43731 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KDELR3O43731 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms