Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 GPAA1P2-202ENST00000606848 1787 ntBASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SHROOM4Q9ULL8 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 PARP8-206ENST00000503665 572 ntTSL 4 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 RNA5SP412-201ENST00000516234 123 ntBASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC30.89■■■□□ 2.54
SHROOM4Q9ULL8 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
SHROOM4Q9ULL8 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
SHROOM4Q9ULL8 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC30.89■■■□□ 2.53
SHROOM4Q9ULL8 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
SHROOM4Q9ULL8 CROCCP4-201ENST00000457096 498 ntBASIC30.89■■■□□ 2.53
SHROOM4Q9ULL8 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC30.89■■■□□ 2.53
SHROOM4Q9ULL8 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC30.89■■■□□ 2.53
SHROOM4Q9ULL8 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC30.89■■■□□ 2.53
SHROOM4Q9ULL8 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC30.89■■■□□ 2.53
SHROOM4Q9ULL8 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 KRT43P-201ENST00000434019 910 ntBASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 AC244093.1-201ENST00000610837 814 ntBASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHROOM4Q9ULL8 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 STX1A-203ENST00000395155 783 ntTSL 2 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 AC098859.1-201ENST00000502915 1238 ntBASIC30.87■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms