Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 TREML5P-201ENST00000421694 576 ntBASIC17.31■□□□□ 0.36
CDH9Q9ULB4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 AL390955.2-201ENST00000603032 514 ntBASIC17.31■□□□□ 0.36
CDH9Q9ULB4 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH9Q9ULB4 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 PCDHA12-202ENST00000613593 2588 ntBASIC17.3■□□□□ 0.36
CDH9Q9ULB4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 AC105021.1-202ENST00000570572 669 ntBASIC17.3■□□□□ 0.36
CDH9Q9ULB4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 AL592424.1-201ENST00000563624 1536 ntBASIC17.3■□□□□ 0.36
CDH9Q9ULB4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.3■□□□□ 0.36
CDH9Q9ULB4 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 AC097493.3-201ENST00000509725 367 ntBASIC17.29■□□□□ 0.36
CDH9Q9ULB4 BANF1P1-201ENST00000553684 263 ntBASIC17.29■□□□□ 0.36
CDH9Q9ULB4 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 MIR4321-201ENST00000592276 80 ntBASIC17.29■□□□□ 0.36
CDH9Q9ULB4 RN7SL828P-201ENST00000607615 303 ntBASIC17.29■□□□□ 0.36
CDH9Q9ULB4 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms