Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 MIR718-201ENST00000390190 70 ntBASIC15.54■□□□□ 0.08
NR1H4Q96RI1 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 AP005242.2-201ENST00000580065 1175 ntBASIC15.54■□□□□ 0.08
NR1H4Q96RI1 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
NR1H4Q96RI1 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 AC097376.2-205ENST00000610159 5334 ntBASIC15.53■□□□□ 0.08
NR1H4Q96RI1 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 COX5BP2-201ENST00000392354 334 ntBASIC15.53■□□□□ 0.08
NR1H4Q96RI1 MIR1238-201ENST00000408483 83 ntBASIC15.53■□□□□ 0.08
NR1H4Q96RI1 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 TSPY17P-201ENST00000450329 467 ntBASIC15.53■□□□□ 0.08
NR1H4Q96RI1 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 MIR4785-201ENST00000585005 73 ntBASIC15.53■□□□□ 0.08
NR1H4Q96RI1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 AC009154.2-201ENST00000621177 724 ntBASIC15.53■□□□□ 0.08
NR1H4Q96RI1 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NR1H4Q96RI1 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NR1H4Q96RI1 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms