Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL592309.1-201ENST00000443127 649 ntBASIC16.34■□□□□ 0.21
VPS35Q96QK1 PRYP6-201ENST00000514804 343 ntBASIC16.34■□□□□ 0.21
VPS35Q96QK1 AC105233.2-201ENST00000523697 349 ntBASIC16.34■□□□□ 0.21
VPS35Q96QK1 AF228730.5-201ENST00000530288 346 ntBASIC16.34■□□□□ 0.21
VPS35Q96QK1 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 AC027307.2-201ENST00000591252 911 ntBASIC16.34■□□□□ 0.21
VPS35Q96QK1 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
VPS35Q96QK1 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VPS35Q96QK1 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.33■□□□□ 0.21
VPS35Q96QK1 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.33■□□□□ 0.21
VPS35Q96QK1 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VPS35Q96QK1 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 AL118508.1-201ENST00000613502 2345 ntBASIC16.33■□□□□ 0.2
VPS35Q96QK1 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 CNN2P11-201ENST00000429351 262 ntBASIC16.33■□□□□ 0.2
VPS35Q96QK1 AC093724.1-201ENST00000448659 1027 ntBASIC16.33■□□□□ 0.2
VPS35Q96QK1 IGHV3-62-201ENST00000520057 340 ntBASIC16.33■□□□□ 0.2
VPS35Q96QK1 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 SNHG9-202ENST00000564014 471 ntBASIC16.33■□□□□ 0.2
VPS35Q96QK1 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS35Q96QK1 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS35Q96QK1 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VPS35Q96QK1 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS35Q96QK1 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS35Q96QK1 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VPS35Q96QK1 MIR346-201ENST00000362234 95 ntBASIC16.32■□□□□ 0.2
VPS35Q96QK1 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS35Q96QK1 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS35Q96QK1 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms