Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC105339.1-204ENST00000636249 355 ntBASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 AL645728.2-201ENST00000641974 660 ntBASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 CICP6-201ENST00000457191 2729 ntBASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 AC254562.1-201ENST00000417586 456 ntBASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 AC022145.2-201ENST00000598203 171 ntBASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 AC093028.1-201ENST00000622998 982 ntBASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 GGT3P-204ENST00000453783 1664 ntBASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 AC006449.5-201ENST00000610658 2098 ntBASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4CQ96CF2 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 AL139400.1-201ENST00000366220 510 ntBASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 CYP2A7P1-201ENST00000595391 815 ntBASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 AC106028.4-201ENST00000614509 607 ntBASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 ANKRD26P3-201ENST00000454044 2748 ntBASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4CQ96CF2 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4CQ96CF2 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms