Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.21■□□□□ 0.51
HPS3Q969F9 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS3Q969F9 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HPS3Q969F9 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.21■□□□□ 0.51
HPS3Q969F9 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HPS3Q969F9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS3Q969F9 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HPS3Q969F9 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS3Q969F9 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
HPS3Q969F9 AC007950.2-201ENST00000615045 2347 ntBASIC18.21■□□□□ 0.51
HPS3Q969F9 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
HPS3Q969F9 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HPS3Q969F9 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HPS3Q969F9 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.2■□□□□ 0.5
HPS3Q969F9 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
HPS3Q969F9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.2■□□□□ 0.5
HPS3Q969F9 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.2■□□□□ 0.5
HPS3Q969F9 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HPS3Q969F9 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.2■□□□□ 0.5
HPS3Q969F9 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.2■□□□□ 0.5
HPS3Q969F9 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.2■□□□□ 0.5
HPS3Q969F9 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.2■□□□□ 0.5
HPS3Q969F9 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.2■□□□□ 0.5
HPS3Q969F9 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.2■□□□□ 0.5
HPS3Q969F9 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
HPS3Q969F9 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.2■□□□□ 0.5
HPS3Q969F9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.2■□□□□ 0.5
HPS3Q969F9 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.2■□□□□ 0.5
HPS3Q969F9 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
HPS3Q969F9 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.2■□□□□ 0.5
HPS3Q969F9 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HPS3Q969F9 AC073439.1-201ENST00000624121 1774 ntBASIC18.19■□□□□ 0.5
HPS3Q969F9 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
HPS3Q969F9 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.19■□□□□ 0.5
HPS3Q969F9 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.19■□□□□ 0.5
HPS3Q969F9 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.19■□□□□ 0.5
HPS3Q969F9 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HPS3Q969F9 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HPS3Q969F9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
HPS3Q969F9 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
HPS3Q969F9 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.19■□□□□ 0.5
HPS3Q969F9 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.19■□□□□ 0.5
HPS3Q969F9 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.19■□□□□ 0.5
HPS3Q969F9 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
HPS3Q969F9 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.19■□□□□ 0.5
HPS3Q969F9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
HPS3Q969F9 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.19■□□□□ 0.5
HPS3Q969F9 AC092902.6-201ENST00000641783 218 ntBASIC18.19■□□□□ 0.5
HPS3Q969F9 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.19■□□□□ 0.5
HPS3Q969F9 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 AL603832.2-201ENST00000566195 2125 ntBASIC18.19■□□□□ 0.5
HPS3Q969F9 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HPS3Q969F9 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.19■□□□□ 0.5
HPS3Q969F9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.18■□□□□ 0.5
HPS3Q969F9 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.18■□□□□ 0.5
HPS3Q969F9 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HPS3Q969F9 FAM58CP-201ENST00000435741 640 ntBASIC18.18■□□□□ 0.5
HPS3Q969F9 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.18■□□□□ 0.5
HPS3Q969F9 AC093724.1-201ENST00000448659 1027 ntBASIC18.18■□□□□ 0.5
HPS3Q969F9 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.18■□□□□ 0.5
HPS3Q969F9 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.18■□□□□ 0.5
HPS3Q969F9 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.18■□□□□ 0.5
HPS3Q969F9 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.18■□□□□ 0.5
HPS3Q969F9 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.18■□□□□ 0.5
HPS3Q969F9 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms