Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AP001350.2-201ENST00000625104 1094 ntBASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 AC129492.6-201ENST00000611383 1305 ntBASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLHC1Q8NHS4 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 AL513477.1-201ENST00000602865 2407 ntBASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 AC018712.1-201ENST00000455767 687 ntBASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 AC108073.2-201ENST00000464002 357 ntBASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 AL603832.2-201ENST00000566195 2125 ntBASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 AC105917.1-201ENST00000506637 2539 ntBASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.84■□□□□ 0.13
CLHC1Q8NHS4 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.83■□□□□ 0.13
CLHC1Q8NHS4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 AL121912.1-201ENST00000603683 238 ntBASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 AC004790.2-201ENST00000623588 572 ntBASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms