Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 AC013268.4-201ENST00000637413 2228 ntBASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 AP005117.1-202ENST00000581724 1908 ntBASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 POM121L3P-201ENST00000419331 1163 ntBASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 AC103564.2-201ENST00000432853 1299 ntBASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 MINOS1P3-201ENST00000457048 203 ntBASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 RN7SL606P-201ENST00000472779 293 ntBASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 AC099336.1-202ENST00000602961 463 ntBASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ZNF540Q8NDQ6 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 GGT4P-201ENST00000623672 1708 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 AC006449.6-201ENST00000612330 2296 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms