Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.57■□□□□ 0.56
CCNA1P78396 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.57■□□□□ 0.56
CCNA1P78396 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.57■□□□□ 0.56
CCNA1P78396 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.57■□□□□ 0.56
CCNA1P78396 CTBP2P3-201ENST00000585629 1255 ntBASIC18.57■□□□□ 0.56
CCNA1P78396 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
CCNA1P78396 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.57■□□□□ 0.56
CCNA1P78396 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.57■□□□□ 0.56
CCNA1P78396 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.57■□□□□ 0.56
CCNA1P78396 OR6D1P-203ENST00000641209 4860 ntBASIC18.57■□□□□ 0.56
CCNA1P78396 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCNA1P78396 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.57■□□□□ 0.56
CCNA1P78396 GGT4P-201ENST00000623672 1708 ntBASIC18.57■□□□□ 0.56
CCNA1P78396 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CCNA1P78396 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCNA1P78396 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCNA1P78396 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.56■□□□□ 0.56
CCNA1P78396 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 AC104596.2-201ENST00000512793 793 ntBASIC18.56■□□□□ 0.56
CCNA1P78396 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.56■□□□□ 0.56
CCNA1P78396 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.56■□□□□ 0.56
CCNA1P78396 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.56■□□□□ 0.56
CCNA1P78396 TMEM261P1-201ENST00000604899 340 ntBASIC18.56■□□□□ 0.56
CCNA1P78396 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.56■□□□□ 0.56
CCNA1P78396 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.56■□□□□ 0.56
CCNA1P78396 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCNA1P78396 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.56■□□□□ 0.56
CCNA1P78396 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.55■□□□□ 0.56
CCNA1P78396 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.55■□□□□ 0.56
CCNA1P78396 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CCNA1P78396 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CCNA1P78396 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.55■□□□□ 0.56
CCNA1P78396 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.55■□□□□ 0.56
CCNA1P78396 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.55■□□□□ 0.56
CCNA1P78396 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.55■□□□□ 0.56
CCNA1P78396 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.55■□□□□ 0.56
CCNA1P78396 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.55■□□□□ 0.56
CCNA1P78396 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC18.55■□□□□ 0.56
CCNA1P78396 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.55■□□□□ 0.56
CCNA1P78396 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CCNA1P78396 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCNA1P78396 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 AC006538.1-201ENST00000567905 1585 ntBASIC18.55■□□□□ 0.56
CCNA1P78396 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CCNA1P78396 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCNA1P78396 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.54■□□□□ 0.56
CCNA1P78396 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCNA1P78396 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCNA1P78396 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
CCNA1P78396 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCNA1P78396 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCNA1P78396 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCNA1P78396 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCNA1P78396 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCNA1P78396 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.54■□□□□ 0.56
CCNA1P78396 PCGF3-213ENST00000620529 1899 ntBASIC18.54■□□□□ 0.56
CCNA1P78396 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCNA1P78396 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCNA1P78396 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.54■□□□□ 0.56
CCNA1P78396 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
CCNA1P78396 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
CCNA1P78396 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCNA1P78396 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.54■□□□□ 0.56
CCNA1P78396 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCNA1P78396 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCNA1P78396 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.54■□□□□ 0.56
CCNA1P78396 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.54■□□□□ 0.56
CCNA1P78396 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.54■□□□□ 0.56
CCNA1P78396 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.54■□□□□ 0.56
CCNA1P78396 AC234783.1-201ENST00000441761 496 ntBASIC18.54■□□□□ 0.56
CCNA1P78396 AC022210.1-201ENST00000449856 793 ntBASIC18.54■□□□□ 0.56
CCNA1P78396 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms