Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
NKX2-1P43699 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 TSPY5P-201ENST00000426936 936 ntBASIC13.53□□□□□ -0.24
NKX2-1P43699 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
NKX2-1P43699 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC13.53□□□□□ -0.24
NKX2-1P43699 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC13.53□□□□□ -0.24
NKX2-1P43699 KRT18P57-201ENST00000443599 1254 ntBASIC13.53□□□□□ -0.24
NKX2-1P43699 KRT18P38-201ENST00000449496 1282 ntBASIC13.53□□□□□ -0.24
NKX2-1P43699 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC13.53□□□□□ -0.24
NKX2-1P43699 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.53□□□□□ -0.24
NKX2-1P43699 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.53□□□□□ -0.24
NKX2-1P43699 PPOX-219ENST00000544598 813 ntTSL 2 BASIC13.53□□□□□ -0.24
NKX2-1P43699 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC13.53□□□□□ -0.24
NKX2-1P43699 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC13.53□□□□□ -0.24
NKX2-1P43699 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC13.53□□□□□ -0.24
NKX2-1P43699 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.53□□□□□ -0.24
NKX2-1P43699 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 AC243591.1-201ENST00000452967 1364 ntBASIC13.53□□□□□ -0.24
NKX2-1P43699 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
NKX2-1P43699 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.53□□□□□ -0.24
NKX2-1P43699 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-1P43699 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NKX2-1P43699 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.52□□□□□ -0.24
NKX2-1P43699 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NKX2-1P43699 PPT1-215ENST00000641471 2368 ntBASIC13.52□□□□□ -0.24
NKX2-1P43699 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
NKX2-1P43699 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.52□□□□□ -0.24
NKX2-1P43699 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NKX2-1P43699 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
NKX2-1P43699 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.24
NKX2-1P43699 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 NABP1-203ENST00000409510 843 ntTSL 5 BASIC13.52□□□□□ -0.25
NKX2-1P43699 AK4P3-201ENST00000418260 669 ntBASIC13.52□□□□□ -0.25
NKX2-1P43699 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC13.52□□□□□ -0.25
NKX2-1P43699 TSPY22P-201ENST00000427496 604 ntBASIC13.52□□□□□ -0.25
NKX2-1P43699 AC246785.2-201ENST00000432512 513 ntBASIC13.52□□□□□ -0.25
NKX2-1P43699 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 VENTXP7-201ENST00000475503 772 ntBASIC13.52□□□□□ -0.25
NKX2-1P43699 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC13.52□□□□□ -0.25
NKX2-1P43699 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC13.52□□□□□ -0.25
NKX2-1P43699 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC13.52□□□□□ -0.25
NKX2-1P43699 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.52□□□□□ -0.25
NKX2-1P43699 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 AC148477.5-201ENST00000625164 1645 ntBASIC13.52□□□□□ -0.25
NKX2-1P43699 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.52□□□□□ -0.25
NKX2-1P43699 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 LINC01144-201ENST00000626198 1710 ntBASIC13.52□□□□□ -0.25
NKX2-1P43699 SNX33P1-201ENST00000592116 1762 ntBASIC13.52□□□□□ -0.25
NKX2-1P43699 PCGF3-213ENST00000620529 1899 ntBASIC13.52□□□□□ -0.25
NKX2-1P43699 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.52□□□□□ -0.25
NKX2-1P43699 AC023157.3-201ENST00000619086 2088 ntBASIC13.52□□□□□ -0.25
NKX2-1P43699 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.52□□□□□ -0.25
NKX2-1P43699 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
NKX2-1P43699 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
NKX2-1P43699 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.52□□□□□ -0.25
NKX2-1P43699 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX2-1P43699 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-1P43699 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-1P43699 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-1P43699 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-1P43699 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
NKX2-1P43699 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms