Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
RFC4P35249 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
RFC4P35249 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RFC4P35249 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RFC4P35249 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC20.45■□□□□ 0.86
RFC4P35249 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.45■□□□□ 0.86
RFC4P35249 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC20.45■□□□□ 0.86
RFC4P35249 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC20.45■□□□□ 0.86
RFC4P35249 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.45■□□□□ 0.86
RFC4P35249 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC20.45■□□□□ 0.86
RFC4P35249 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.45■□□□□ 0.86
RFC4P35249 AC133539.2-201ENST00000604757 467 ntBASIC20.45■□□□□ 0.86
RFC4P35249 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.45■□□□□ 0.86
RFC4P35249 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
RFC4P35249 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC4P35249 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
RFC4P35249 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.44■□□□□ 0.86
RFC4P35249 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.44■□□□□ 0.86
RFC4P35249 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC4P35249 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
RFC4P35249 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC4P35249 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 BRWD1P1-201ENST00000401091 371 ntBASIC20.44■□□□□ 0.86
RFC4P35249 AL162726.2-201ENST00000438986 1017 ntBASIC20.44■□□□□ 0.86
RFC4P35249 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC20.44■□□□□ 0.86
RFC4P35249 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC4P35249 HNRNPA1P13-201ENST00000510646 963 ntBASIC20.44■□□□□ 0.86
RFC4P35249 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC20.44■□□□□ 0.86
RFC4P35249 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC20.44■□□□□ 0.86
RFC4P35249 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC20.44■□□□□ 0.86
RFC4P35249 AC036164.1-201ENST00000570544 333 ntBASIC20.44■□□□□ 0.86
RFC4P35249 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC4P35249 CU634019.7-201ENST00000624153 1185 ntBASIC20.44■□□□□ 0.86
RFC4P35249 FP236241.2-201ENST00000624906 1185 ntBASIC20.44■□□□□ 0.86
RFC4P35249 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC4P35249 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.44■□□□□ 0.86
RFC4P35249 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC4P35249 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC4P35249 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.44■□□□□ 0.86
RFC4P35249 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
RFC4P35249 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
RFC4P35249 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
RFC4P35249 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
RFC4P35249 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 RNF165-205ENST00000588679 2904 ntBASIC20.43■□□□□ 0.86
RFC4P35249 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC20.43■□□□□ 0.86
RFC4P35249 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC20.43■□□□□ 0.86
RFC4P35249 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.43■□□□□ 0.86
RFC4P35249 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.43■□□□□ 0.86
RFC4P35249 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC20.43■□□□□ 0.86
RFC4P35249 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC20.43■□□□□ 0.86
RFC4P35249 AL022328.1-201ENST00000610050 478 ntBASIC20.43■□□□□ 0.86
RFC4P35249 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.43■□□□□ 0.86
RFC4P35249 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
RFC4P35249 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC20.43■□□□□ 0.86
RFC4P35249 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
RFC4P35249 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.43■□□□□ 0.86
RFC4P35249 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.43■□□□□ 0.86
RFC4P35249 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC4P35249 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms