Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HOXD3P31249 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HOXD3P31249 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC12.74□□□□□ -0.37
HOXD3P31249 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HOXD3P31249 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC12.74□□□□□ -0.37
HOXD3P31249 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC12.74□□□□□ -0.37
HOXD3P31249 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
HOXD3P31249 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC12.73□□□□□ -0.37
HOXD3P31249 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC12.73□□□□□ -0.37
HOXD3P31249 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
HOXD3P31249 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC12.73□□□□□ -0.37
HOXD3P31249 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
HOXD3P31249 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
HOXD3P31249 AD000864.1-201ENST00000624076 2295 ntBASIC12.73□□□□□ -0.37
HOXD3P31249 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
HOXD3P31249 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
HOXD3P31249 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 FO538757.1-201ENST00000623083 1397 ntBASIC12.73□□□□□ -0.37
HOXD3P31249 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC12.73□□□□□ -0.37
HOXD3P31249 DPM2-202ENST00000373110 738 ntTSL 2 BASIC12.73□□□□□ -0.37
HOXD3P31249 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.73□□□□□ -0.37
HOXD3P31249 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 TREML5P-201ENST00000421694 576 ntBASIC12.73□□□□□ -0.37
HOXD3P31249 GPS2P2-201ENST00000430745 888 ntBASIC12.73□□□□□ -0.37
HOXD3P31249 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.73□□□□□ -0.37
HOXD3P31249 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC12.73□□□□□ -0.37
HOXD3P31249 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC12.73□□□□□ -0.37
HOXD3P31249 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.73□□□□□ -0.37
HOXD3P31249 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC12.73□□□□□ -0.37
HOXD3P31249 AC190387.1-201ENST00000551683 408 ntBASIC12.73□□□□□ -0.37
HOXD3P31249 AC051619.7-201ENST00000568314 623 ntBASIC12.73□□□□□ -0.37
HOXD3P31249 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC12.73□□□□□ -0.37
HOXD3P31249 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.73□□□□□ -0.37
HOXD3P31249 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.73□□□□□ -0.37
HOXD3P31249 AP001059.3-201ENST00000619053 235 ntBASIC12.73□□□□□ -0.37
HOXD3P31249 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC12.73□□□□□ -0.37
HOXD3P31249 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
HOXD3P31249 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC12.73□□□□□ -0.37
HOXD3P31249 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
HOXD3P31249 AL512652.2-201ENST00000625156 1716 ntBASIC12.73□□□□□ -0.37
HOXD3P31249 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HOXD3P31249 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HOXD3P31249 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC12.72□□□□□ -0.37
HOXD3P31249 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 GCK-202ENST00000345378 2421 ntTSL 2 BASIC12.72□□□□□ -0.37
HOXD3P31249 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HOXD3P31249 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC12.72□□□□□ -0.37
HOXD3P31249 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
HOXD3P31249 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HOXD3P31249 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HOXD3P31249 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC12.72□□□□□ -0.37
HOXD3P31249 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC12.72□□□□□ -0.37
HOXD3P31249 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 BAD-202ENST00000394531 631 ntTSL 3 BASIC12.72□□□□□ -0.37
HOXD3P31249 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC12.72□□□□□ -0.37
HOXD3P31249 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC12.72□□□□□ -0.37
HOXD3P31249 AC005034.1-201ENST00000426657 489 ntBASIC12.72□□□□□ -0.37
HOXD3P31249 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC12.72□□□□□ -0.37
HOXD3P31249 TSPY16P-201ENST00000449843 468 ntBASIC12.72□□□□□ -0.37
HOXD3P31249 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC12.72□□□□□ -0.37
HOXD3P31249 TERF1P3-201ENST00000505638 1227 ntBASIC12.72□□□□□ -0.37
HOXD3P31249 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
HOXD3P31249 POLD4-211ENST00000539074 714 ntTSL 3 BASIC12.72□□□□□ -0.37
HOXD3P31249 BAD-207ENST00000544785 525 ntTSL 3 BASIC12.72□□□□□ -0.37
HOXD3P31249 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXD3P31249 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms