Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.29■□□□□ 0.36
BDNFP23560 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.29■□□□□ 0.36
BDNFP23560 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.29■□□□□ 0.36
BDNFP23560 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.29■□□□□ 0.36
BDNFP23560 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.29■□□□□ 0.36
BDNFP23560 AC138649.4-201ENST00000612222 287 ntBASIC17.29■□□□□ 0.36
BDNFP23560 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
BDNFP23560 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.29■□□□□ 0.36
BDNFP23560 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.29■□□□□ 0.36
BDNFP23560 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.29■□□□□ 0.36
BDNFP23560 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.29■□□□□ 0.36
BDNFP23560 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
BDNFP23560 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
BDNFP23560 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.29■□□□□ 0.36
BDNFP23560 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.29■□□□□ 0.36
BDNFP23560 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
BDNFP23560 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.28■□□□□ 0.36
BDNFP23560 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
BDNFP23560 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.28■□□□□ 0.36
BDNFP23560 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 AC084018.2-201ENST00000613093 2607 ntBASIC17.28■□□□□ 0.36
BDNFP23560 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.28■□□□□ 0.36
BDNFP23560 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
BDNFP23560 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
BDNFP23560 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.28■□□□□ 0.36
BDNFP23560 AC069120.2-201ENST00000524091 540 ntBASIC17.28■□□□□ 0.36
BDNFP23560 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.28■□□□□ 0.36
BDNFP23560 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
BDNFP23560 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
BDNFP23560 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.28■□□□□ 0.36
BDNFP23560 AC007967.4-201ENST00000614700 386 ntBASIC17.28■□□□□ 0.36
BDNFP23560 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
BDNFP23560 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.28■□□□□ 0.36
BDNFP23560 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
BDNFP23560 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
BDNFP23560 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.28■□□□□ 0.36
BDNFP23560 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BDNFP23560 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.27■□□□□ 0.36
BDNFP23560 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
BDNFP23560 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
BDNFP23560 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.27■□□□□ 0.36
BDNFP23560 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.27■□□□□ 0.36
BDNFP23560 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
BDNFP23560 AC093214.1-201ENST00000511688 1107 ntBASIC17.27■□□□□ 0.36
BDNFP23560 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.27■□□□□ 0.36
BDNFP23560 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.27■□□□□ 0.36
BDNFP23560 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.27■□□□□ 0.36
BDNFP23560 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BDNFP23560 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
BDNFP23560 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.27■□□□□ 0.35
BDNFP23560 AL139384.1-201ENST00000612143 3047 ntBASIC17.27■□□□□ 0.35
BDNFP23560 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
BDNFP23560 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.27■□□□□ 0.35
BDNFP23560 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
BDNFP23560 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
BDNFP23560 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms