Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HMGA1P17096 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGA1P17096 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
HMGA1P17096 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 HIST3H2BA-201ENST00000436555 524 ntBASIC16.91■□□□□ 0.3
HMGA1P17096 GAPDHP21-201ENST00000450301 1010 ntBASIC16.91■□□□□ 0.3
HMGA1P17096 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGA1P17096 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.91■□□□□ 0.3
HMGA1P17096 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 AL596325.1-201ENST00000563991 1082 ntBASIC16.91■□□□□ 0.3
HMGA1P17096 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGA1P17096 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.91■□□□□ 0.3
HMGA1P17096 AL132655.2-201ENST00000596276 594 ntBASIC16.91■□□□□ 0.3
HMGA1P17096 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGA1P17096 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 AC007541.1-201ENST00000570282 1469 ntBASIC16.91■□□□□ 0.3
HMGA1P17096 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGA1P17096 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGA1P17096 AC009053.2-201ENST00000563701 2365 ntBASIC16.91■□□□□ 0.3
HMGA1P17096 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGA1P17096 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
HMGA1P17096 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGA1P17096 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
HMGA1P17096 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
HMGA1P17096 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HMGA1P17096 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGA1P17096 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HMGA1P17096 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGA1P17096 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HMGA1P17096 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGA1P17096 SDHAP3-202ENST00000515467 728 ntBASIC16.9■□□□□ 0.3
HMGA1P17096 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGA1P17096 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGA1P17096 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 AC027307.3-201ENST00000594262 1100 ntBASIC16.9■□□□□ 0.3
HMGA1P17096 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGA1P17096 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.9■□□□□ 0.3
HMGA1P17096 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 MIR6069-201ENST00000620069 79 ntBASIC16.9■□□□□ 0.3
HMGA1P17096 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGA1P17096 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HMGA1P17096 AC063926.2-201ENST00000623766 1308 ntBASIC16.9■□□□□ 0.3
HMGA1P17096 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGA1P17096 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 ALOX12P2-203ENST00000570921 1945 ntBASIC16.9■□□□□ 0.3
HMGA1P17096 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGA1P17096 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGA1P17096 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 AC011676.5-201ENST00000624864 2660 ntBASIC16.89■□□□□ 0.29
HMGA1P17096 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGA1P17096 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGA1P17096 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
HMGA1P17096 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.89■□□□□ 0.29
HMGA1P17096 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGA1P17096 AL353779.1-201ENST00000434793 351 ntBASIC16.89■□□□□ 0.29
HMGA1P17096 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
HMGA1P17096 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
HMGA1P17096 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
HMGA1P17096 TP53TG3HP-202ENST00000569755 579 ntBASIC16.89■□□□□ 0.29
HMGA1P17096 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.89■□□□□ 0.29
HMGA1P17096 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGA1P17096 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms