Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
KRT3P12035 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.35■□□□□ 0.37
KRT3P12035 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.35■□□□□ 0.37
KRT3P12035 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.35■□□□□ 0.37
KRT3P12035 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
KRT3P12035 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
KRT3P12035 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
KRT3P12035 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
KRT3P12035 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.35■□□□□ 0.37
KRT3P12035 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
KRT3P12035 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
KRT3P12035 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
KRT3P12035 AC068137.2-201ENST00000605408 478 ntBASIC17.35■□□□□ 0.37
KRT3P12035 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.35■□□□□ 0.37
KRT3P12035 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.35■□□□□ 0.37
KRT3P12035 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
KRT3P12035 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
KRT3P12035 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.35■□□□□ 0.37
KRT3P12035 AC092919.2-201ENST00000623631 1645 ntBASIC17.35■□□□□ 0.37
KRT3P12035 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.35■□□□□ 0.37
KRT3P12035 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
KRT3P12035 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 AC005622.1-201ENST00000636801 1703 ntBASIC17.35■□□□□ 0.37
KRT3P12035 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
KRT3P12035 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
KRT3P12035 FLJ16779-201ENST00000612722 7638 ntBASIC17.35■□□□□ 0.37
KRT3P12035 AC006449.6-201ENST00000612330 2296 ntBASIC17.35■□□□□ 0.37
KRT3P12035 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
KRT3P12035 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT3P12035 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT3P12035 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.34■□□□□ 0.37
KRT3P12035 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
KRT3P12035 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
KRT3P12035 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.34■□□□□ 0.37
KRT3P12035 AL513523.2-202ENST00000427283 2040 ntBASIC17.34■□□□□ 0.37
KRT3P12035 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
KRT3P12035 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.34■□□□□ 0.37
KRT3P12035 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT3P12035 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.34■□□□□ 0.37
KRT3P12035 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.34■□□□□ 0.37
KRT3P12035 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.34■□□□□ 0.37
KRT3P12035 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.34■□□□□ 0.37
KRT3P12035 REXO1L8P-201ENST00000604378 1897 ntBASIC17.34■□□□□ 0.37
KRT3P12035 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT3P12035 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT3P12035 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT3P12035 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
KRT3P12035 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.34■□□□□ 0.37
KRT3P12035 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
KRT3P12035 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
KRT3P12035 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
KRT3P12035 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
KRT3P12035 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
KRT3P12035 AL596087.1-201ENST00000400979 1969 ntBASIC17.33■□□□□ 0.37
KRT3P12035 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
KRT3P12035 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.33■□□□□ 0.37
KRT3P12035 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
KRT3P12035 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.33■□□□□ 0.37
KRT3P12035 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
KRT3P12035 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
KRT3P12035 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
KRT3P12035 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.33■□□□□ 0.37
KRT3P12035 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.33■□□□□ 0.37
KRT3P12035 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
KRT3P12035 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
KRT3P12035 MIR940-201ENST00000401276 94 ntBASIC17.33■□□□□ 0.36
KRT3P12035 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.33■□□□□ 0.36
KRT3P12035 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
KRT3P12035 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.33■□□□□ 0.36
KRT3P12035 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.33■□□□□ 0.36
KRT3P12035 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.33■□□□□ 0.36
KRT3P12035 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.33■□□□□ 0.36
KRT3P12035 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
KRT3P12035 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
KRT3P12035 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms