Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.25■□□□□ 0.35
RB1P06400 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RB1P06400 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RB1P06400 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
RB1P06400 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.25■□□□□ 0.35
RB1P06400 ANKRD19P-201ENST00000338192 862 ntBASIC17.25■□□□□ 0.35
RB1P06400 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RB1P06400 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.25■□□□□ 0.35
RB1P06400 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RB1P06400 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.25■□□□□ 0.35
RB1P06400 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RB1P06400 USP32P1-208ENST00000506594 1164 ntBASIC17.25■□□□□ 0.35
RB1P06400 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RB1P06400 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.25■□□□□ 0.35
RB1P06400 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
RB1P06400 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.25■□□□□ 0.35
RB1P06400 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.25■□□□□ 0.35
RB1P06400 AC084346.2-201ENST00000607097 949 ntBASIC17.25■□□□□ 0.35
RB1P06400 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RB1P06400 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RB1P06400 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RB1P06400 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RB1P06400 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RB1P06400 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RB1P06400 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RB1P06400 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 PCDHB17P-201ENST00000539533 2393 ntBASIC17.24■□□□□ 0.35
RB1P06400 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.24■□□□□ 0.35
RB1P06400 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RB1P06400 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RB1P06400 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.24■□□□□ 0.35
RB1P06400 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.24■□□□□ 0.35
RB1P06400 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.24■□□□□ 0.35
RB1P06400 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RB1P06400 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RB1P06400 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.24■□□□□ 0.35
RB1P06400 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.24■□□□□ 0.35
RB1P06400 RN7SL399P-201ENST00000471648 279 ntBASIC17.24■□□□□ 0.35
RB1P06400 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.24■□□□□ 0.35
RB1P06400 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.24■□□□□ 0.35
RB1P06400 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.24■□□□□ 0.35
RB1P06400 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RB1P06400 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.24■□□□□ 0.35
RB1P06400 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RB1P06400 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RB1P06400 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RB1P06400 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
RB1P06400 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.24■□□□□ 0.35
RB1P06400 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.24■□□□□ 0.35
RB1P06400 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RB1P06400 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RB1P06400 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RB1P06400 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RB1P06400 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.23■□□□□ 0.35
RB1P06400 AC134043.2-201ENST00000624206 2238 ntBASIC17.23■□□□□ 0.35
RB1P06400 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
RB1P06400 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.23■□□□□ 0.35
RB1P06400 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
RB1P06400 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.23■□□□□ 0.35
RB1P06400 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RB1P06400 HIST3H2BA-201ENST00000436555 524 ntBASIC17.23■□□□□ 0.35
RB1P06400 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.23■□□□□ 0.35
RB1P06400 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
RB1P06400 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.23■□□□□ 0.35
RB1P06400 SLC25A47P1-201ENST00000531577 414 ntBASIC17.23■□□□□ 0.35
RB1P06400 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
RB1P06400 AL583810.1-201ENST00000553344 1045 ntBASIC17.23■□□□□ 0.35
RB1P06400 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.23■□□□□ 0.35
RB1P06400 MIR4538-201ENST00000581377 78 ntBASIC17.23■□□□□ 0.35
RB1P06400 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.23■□□□□ 0.35
RB1P06400 AL365330.1-201ENST00000607459 531 ntBASIC17.23■□□□□ 0.35
RB1P06400 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.23■□□□□ 0.35
RB1P06400 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.23■□□□□ 0.35
RB1P06400 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.23■□□□□ 0.35
RB1P06400 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RB1P06400 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RB1P06400 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RB1P06400 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RB1P06400 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RB1P06400 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.22■□□□□ 0.35
RB1P06400 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RB1P06400 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms