Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 LINC01124-201ENST00000409786 2117 ntBASIC24.84■■□□□ 1.57
PCDHA3Q9Y5H8 PVT1-219ENST00000523427 938 ntTSL 3 BASIC24.84■■□□□ 1.57
PCDHA3Q9Y5H8 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC24.84■■□□□ 1.57
PCDHA3Q9Y5H8 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.84■■□□□ 1.57
PCDHA3Q9Y5H8 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.83■■□□□ 1.57
PCDHA3Q9Y5H8 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC24.83■■□□□ 1.57
PCDHA3Q9Y5H8 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHA3Q9Y5H8 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHA3Q9Y5H8 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHA3Q9Y5H8 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC24.83■■□□□ 1.57
PCDHA3Q9Y5H8 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.83■■□□□ 1.56
PCDHA3Q9Y5H8 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
PCDHA3Q9Y5H8 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHA3Q9Y5H8 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA3Q9Y5H8 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA3Q9Y5H8 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA3Q9Y5H8 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA3Q9Y5H8 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA3Q9Y5H8 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA3Q9Y5H8 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHA3Q9Y5H8 TMEM202-AS1-202ENST00000565181 2325 ntBASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 RP9P-202ENST00000450133 1212 ntBASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 AC022413.1-201ENST00000624602 984 ntBASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHA3Q9Y5H8 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHA3Q9Y5H8 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
PCDHA3Q9Y5H8 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHA3Q9Y5H8 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHA3Q9Y5H8 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHA3Q9Y5H8 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHA3Q9Y5H8 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHA3Q9Y5H8 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC24.77■■□□□ 1.56
PCDHA3Q9Y5H8 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.77■■□□□ 1.56
PCDHA3Q9Y5H8 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA3Q9Y5H8 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA3Q9Y5H8 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA3Q9Y5H8 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
PCDHA3Q9Y5H8 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA3Q9Y5H8 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.76■■□□□ 1.55
PCDHA3Q9Y5H8 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA3Q9Y5H8 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.76■■□□□ 1.55
PCDHA3Q9Y5H8 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC24.76■■□□□ 1.55
PCDHA3Q9Y5H8 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 LINC00543-201ENST00000567234 1845 ntBASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 AC093536.1-201ENST00000569153 554 ntBASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.75■■□□□ 1.55
PCDHA3Q9Y5H8 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHA3Q9Y5H8 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHA3Q9Y5H8 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHA3Q9Y5H8 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC24.74■■□□□ 1.55
PCDHA3Q9Y5H8 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHA3Q9Y5H8 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
PCDHA3Q9Y5H8 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.73■■□□□ 1.55
PCDHA3Q9Y5H8 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHA3Q9Y5H8 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.73■■□□□ 1.55
PCDHA3Q9Y5H8 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHA3Q9Y5H8 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHA3Q9Y5H8 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHA3Q9Y5H8 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA3Q9Y5H8 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
PCDHA3Q9Y5H8 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.72■■□□□ 1.55
PCDHA3Q9Y5H8 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
PCDHA3Q9Y5H8 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA3Q9Y5H8 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA3Q9Y5H8 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA3Q9Y5H8 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms