Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
BRF2Q9HAW0 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
BRF2Q9HAW0 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
BRF2Q9HAW0 AC009831.1-201ENST00000580420 1582 ntBASIC22.74■■□□□ 1.23
BRF2Q9HAW0 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
BRF2Q9HAW0 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
BRF2Q9HAW0 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
BRF2Q9HAW0 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
BRF2Q9HAW0 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
BRF2Q9HAW0 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
BRF2Q9HAW0 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
BRF2Q9HAW0 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
BRF2Q9HAW0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
BRF2Q9HAW0 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
BRF2Q9HAW0 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
BRF2Q9HAW0 AC133552.2-201ENST00000619106 1032 ntBASIC22.72■■□□□ 1.23
BRF2Q9HAW0 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
BRF2Q9HAW0 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
BRF2Q9HAW0 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
BRF2Q9HAW0 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
BRF2Q9HAW0 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.71■■□□□ 1.23
BRF2Q9HAW0 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
BRF2Q9HAW0 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
BRF2Q9HAW0 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
BRF2Q9HAW0 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.7■■□□□ 1.22
BRF2Q9HAW0 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
BRF2Q9HAW0 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
BRF2Q9HAW0 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
BRF2Q9HAW0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
BRF2Q9HAW0 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BRF2Q9HAW0 AL139125.2-201ENST00000623134 1869 ntBASIC22.69■■□□□ 1.22
BRF2Q9HAW0 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
BRF2Q9HAW0 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BRF2Q9HAW0 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
BRF2Q9HAW0 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRF2Q9HAW0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
BRF2Q9HAW0 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRF2Q9HAW0 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRF2Q9HAW0 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.68■■□□□ 1.22
BRF2Q9HAW0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRF2Q9HAW0 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
BRF2Q9HAW0 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRF2Q9HAW0 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 AC093323.1-202ENST00000635031 2045 ntBASIC22.67■■□□□ 1.22
BRF2Q9HAW0 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
BRF2Q9HAW0 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRF2Q9HAW0 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
BRF2Q9HAW0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
BRF2Q9HAW0 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
BRF2Q9HAW0 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
BRF2Q9HAW0 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRF2Q9HAW0 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
BRF2Q9HAW0 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC22.65■■□□□ 1.22
BRF2Q9HAW0 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRF2Q9HAW0 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
BRF2Q9HAW0 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRF2Q9HAW0 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
BRF2Q9HAW0 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.64■■□□□ 1.22
BRF2Q9HAW0 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.64■■□□□ 1.22
BRF2Q9HAW0 RARRES2P2-201ENST00000394842 485 ntBASIC22.64■■□□□ 1.21
BRF2Q9HAW0 MIR6089-201ENST00000616698 64 ntBASIC22.64■■□□□ 1.21
BRF2Q9HAW0 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BRF2Q9HAW0 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
BRF2Q9HAW0 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.63■■□□□ 1.21
BRF2Q9HAW0 HSD17B1P1-201ENST00000590052 955 ntBASIC22.63■■□□□ 1.21
BRF2Q9HAW0 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
BRF2Q9HAW0 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.63■■□□□ 1.21
BRF2Q9HAW0 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.63■■□□□ 1.21
BRF2Q9HAW0 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRF2Q9HAW0 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.61■■□□□ 1.21
BRF2Q9HAW0 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
BRF2Q9HAW0 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
BRF2Q9HAW0 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.61■■□□□ 1.21
BRF2Q9HAW0 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
BRF2Q9HAW0 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms