Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.95■■□□□ 1.42
VPS13AQ96RL7 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VPS13AQ96RL7 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VPS13AQ96RL7 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VPS13AQ96RL7 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC23.94■■□□□ 1.42
VPS13AQ96RL7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VPS13AQ96RL7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.94■■□□□ 1.42
VPS13AQ96RL7 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VPS13AQ96RL7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.93■■□□□ 1.42
VPS13AQ96RL7 AC024257.2-201ENST00000549699 147 ntBASIC23.93■■□□□ 1.42
VPS13AQ96RL7 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VPS13AQ96RL7 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VPS13AQ96RL7 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VPS13AQ96RL7 RARRES2P11-201ENST00000635158 484 ntBASIC23.93■■□□□ 1.42
VPS13AQ96RL7 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC23.93■■□□□ 1.42
VPS13AQ96RL7 BX255925.1-201ENST00000566954 1854 ntBASIC23.93■■□□□ 1.42
VPS13AQ96RL7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
VPS13AQ96RL7 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.93■■□□□ 1.42
VPS13AQ96RL7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.93■■□□□ 1.42
VPS13AQ96RL7 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
VPS13AQ96RL7 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VPS13AQ96RL7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
VPS13AQ96RL7 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
VPS13AQ96RL7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.92■■□□□ 1.42
VPS13AQ96RL7 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VPS13AQ96RL7 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.92■■□□□ 1.42
VPS13AQ96RL7 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
VPS13AQ96RL7 MTDHP2-201ENST00000601468 714 ntBASIC23.91■■□□□ 1.42
VPS13AQ96RL7 UNC93B3-201ENST00000308076 687 ntBASIC23.91■■□□□ 1.42
VPS13AQ96RL7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC23.91■■□□□ 1.42
VPS13AQ96RL7 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
VPS13AQ96RL7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.91■■□□□ 1.42
VPS13AQ96RL7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VPS13AQ96RL7 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VPS13AQ96RL7 EDA-201ENST00000338901 1233 ntBASIC23.9■■□□□ 1.42
VPS13AQ96RL7 AP001330.3-201ENST00000520123 633 ntBASIC23.9■■□□□ 1.42
VPS13AQ96RL7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VPS13AQ96RL7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.9■■□□□ 1.42
VPS13AQ96RL7 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC23.9■■□□□ 1.42
VPS13AQ96RL7 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
VPS13AQ96RL7 MIR939-201ENST00000401314 82 ntBASIC23.89■■□□□ 1.42
VPS13AQ96RL7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.89■■□□□ 1.42
VPS13AQ96RL7 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.89■■□□□ 1.42
VPS13AQ96RL7 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VPS13AQ96RL7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 AP002414.2-202ENST00000590929 1450 ntBASIC23.88■■□□□ 1.41
VPS13AQ96RL7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS13AQ96RL7 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
VPS13AQ96RL7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.87■■□□□ 1.41
VPS13AQ96RL7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
VPS13AQ96RL7 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VPS13AQ96RL7 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.87■■□□□ 1.41
VPS13AQ96RL7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
VPS13AQ96RL7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.87■■□□□ 1.41
VPS13AQ96RL7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VPS13AQ96RL7 AL449106.1-201ENST00000608517 1980 ntBASIC23.86■■□□□ 1.41
VPS13AQ96RL7 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS13AQ96RL7 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.86■■□□□ 1.41
VPS13AQ96RL7 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS13AQ96RL7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VPS13AQ96RL7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS13AQ96RL7 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.85■■□□□ 1.41
VPS13AQ96RL7 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS13AQ96RL7 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
VPS13AQ96RL7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.85■■□□□ 1.41
VPS13AQ96RL7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.85■■□□□ 1.41
VPS13AQ96RL7 AF131216.4-201ENST00000638924 1588 ntBASIC23.85■■□□□ 1.41
VPS13AQ96RL7 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.85■■□□□ 1.41
VPS13AQ96RL7 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.84■■□□□ 1.41
VPS13AQ96RL7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
VPS13AQ96RL7 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.83■■□□□ 1.41
VPS13AQ96RL7 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS13AQ96RL7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
VPS13AQ96RL7 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
VPS13AQ96RL7 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS13AQ96RL7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
VPS13AQ96RL7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS13AQ96RL7 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.82■■□□□ 1.4
VPS13AQ96RL7 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS13AQ96RL7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.82■■□□□ 1.4
VPS13AQ96RL7 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
VPS13AQ96RL7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.81■■□□□ 1.4
VPS13AQ96RL7 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS13AQ96RL7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.81■■□□□ 1.4
VPS13AQ96RL7 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.81■■□□□ 1.4
VPS13AQ96RL7 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS13AQ96RL7 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.81■■□□□ 1.4
VPS13AQ96RL7 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.81■■□□□ 1.4
VPS13AQ96RL7 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS13AQ96RL7 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 873.1 ms