Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC23.7■■□□□ 1.38
CFAP54Q96N23 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
CFAP54Q96N23 MTDHP2-201ENST00000601468 714 ntBASIC23.7■■□□□ 1.38
CFAP54Q96N23 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CFAP54Q96N23 MIR4281-201ENST00000580852 62 ntBASIC23.69■■□□□ 1.38
CFAP54Q96N23 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CFAP54Q96N23 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
CFAP54Q96N23 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CFAP54Q96N23 AF213884.3-201ENST00000563833 479 ntBASIC23.68■■□□□ 1.38
CFAP54Q96N23 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
CFAP54Q96N23 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.68■■□□□ 1.38
CFAP54Q96N23 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CFAP54Q96N23 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.68■■□□□ 1.38
CFAP54Q96N23 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
CFAP54Q96N23 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.67■■□□□ 1.38
CFAP54Q96N23 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
CFAP54Q96N23 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.67■■□□□ 1.38
CFAP54Q96N23 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CFAP54Q96N23 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CFAP54Q96N23 AL136162.1-201ENST00000607711 1078 ntBASIC23.67■■□□□ 1.38
CFAP54Q96N23 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.67■■□□□ 1.38
CFAP54Q96N23 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CFAP54Q96N23 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CFAP54Q96N23 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CFAP54Q96N23 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CFAP54Q96N23 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
CFAP54Q96N23 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CFAP54Q96N23 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.66■■□□□ 1.38
CFAP54Q96N23 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CFAP54Q96N23 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
CFAP54Q96N23 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.65■■□□□ 1.38
CFAP54Q96N23 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CFAP54Q96N23 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CFAP54Q96N23 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CFAP54Q96N23 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
CFAP54Q96N23 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CFAP54Q96N23 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CFAP54Q96N23 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.64■■□□□ 1.37
CFAP54Q96N23 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.64■■□□□ 1.37
CFAP54Q96N23 AC091305.1-201ENST00000479476 895 ntBASIC23.63■■□□□ 1.37
CFAP54Q96N23 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.63■■□□□ 1.37
CFAP54Q96N23 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.63■■□□□ 1.37
CFAP54Q96N23 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.63■■□□□ 1.37
CFAP54Q96N23 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC23.63■■□□□ 1.37
CFAP54Q96N23 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.63■■□□□ 1.37
CFAP54Q96N23 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.63■■□□□ 1.37
CFAP54Q96N23 WHAMMP3-201ENST00000611636 1609 ntBASIC23.63■■□□□ 1.37
CFAP54Q96N23 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CFAP54Q96N23 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.63■■□□□ 1.37
CFAP54Q96N23 AC066615.1-201ENST00000640911 628 ntBASIC23.63■■□□□ 1.37
CFAP54Q96N23 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CFAP54Q96N23 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.62■■□□□ 1.37
CFAP54Q96N23 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CFAP54Q96N23 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.62■■□□□ 1.37
CFAP54Q96N23 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CFAP54Q96N23 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.61■■□□□ 1.37
CFAP54Q96N23 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CFAP54Q96N23 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CFAP54Q96N23 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
CFAP54Q96N23 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CFAP54Q96N23 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CFAP54Q96N23 SLC47A1P1-202ENST00000449666 945 ntBASIC23.61■■□□□ 1.37
CFAP54Q96N23 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.61■■□□□ 1.37
CFAP54Q96N23 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.6■■□□□ 1.37
CFAP54Q96N23 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CFAP54Q96N23 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.6■■□□□ 1.37
CFAP54Q96N23 HLA-L-209ENST00000420110 1011 ntBASIC23.6■■□□□ 1.37
CFAP54Q96N23 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.59■■□□□ 1.37
CFAP54Q96N23 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
CFAP54Q96N23 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
CFAP54Q96N23 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.59■■□□□ 1.37
CFAP54Q96N23 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
CFAP54Q96N23 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CFAP54Q96N23 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CFAP54Q96N23 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.58■■□□□ 1.37
CFAP54Q96N23 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.36
CFAP54Q96N23 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CFAP54Q96N23 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CFAP54Q96N23 AC034268.1-201ENST00000441047 882 ntBASIC23.58■■□□□ 1.36
CFAP54Q96N23 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.58■■□□□ 1.36
CFAP54Q96N23 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CFAP54Q96N23 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.57■■□□□ 1.36
CFAP54Q96N23 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CFAP54Q96N23 AL137784.2-201ENST00000607332 1000 ntBASIC23.57■■□□□ 1.36
CFAP54Q96N23 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.57■■□□□ 1.36
CFAP54Q96N23 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CFAP54Q96N23 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CFAP54Q96N23 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
CFAP54Q96N23 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.57■■□□□ 1.36
CFAP54Q96N23 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.56■■□□□ 1.36
CFAP54Q96N23 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CFAP54Q96N23 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CFAP54Q96N23 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.56■■□□□ 1.36
CFAP54Q96N23 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CFAP54Q96N23 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.55■■□□□ 1.36
CFAP54Q96N23 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
CFAP54Q96N23 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
CFAP54Q96N23 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
CFAP54Q96N23 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CFAP54Q96N23 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms