Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24■■□□□ 1.43
HMGB4Q8WW32 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24■■□□□ 1.43
HMGB4Q8WW32 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGB4Q8WW32 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24■■□□□ 1.43
HMGB4Q8WW32 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24■■□□□ 1.43
HMGB4Q8WW32 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
HMGB4Q8WW32 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB4Q8WW32 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
HMGB4Q8WW32 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB4Q8WW32 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB4Q8WW32 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB4Q8WW32 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.98■■□□□ 1.43
HMGB4Q8WW32 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB4Q8WW32 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB4Q8WW32 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
HMGB4Q8WW32 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGB4Q8WW32 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
HMGB4Q8WW32 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
HMGB4Q8WW32 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.96■■□□□ 1.43
HMGB4Q8WW32 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.96■■□□□ 1.43
HMGB4Q8WW32 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.95■■□□□ 1.43
HMGB4Q8WW32 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.95■■□□□ 1.42
HMGB4Q8WW32 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.95■■□□□ 1.42
HMGB4Q8WW32 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
HMGB4Q8WW32 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
HMGB4Q8WW32 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
HMGB4Q8WW32 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB4Q8WW32 MIR935-201ENST00000401179 91 ntBASIC23.94■■□□□ 1.42
HMGB4Q8WW32 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB4Q8WW32 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.94■■□□□ 1.42
HMGB4Q8WW32 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB4Q8WW32 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.94■■□□□ 1.42
HMGB4Q8WW32 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.93■■□□□ 1.42
HMGB4Q8WW32 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 AC010997.5-201ENST00000609182 354 ntBASIC23.93■■□□□ 1.42
HMGB4Q8WW32 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.93■■□□□ 1.42
HMGB4Q8WW32 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.92■■□□□ 1.42
HMGB4Q8WW32 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGB4Q8WW32 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGB4Q8WW32 AC131281.2-201ENST00000520478 145 ntBASIC23.92■■□□□ 1.42
HMGB4Q8WW32 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.92■■□□□ 1.42
HMGB4Q8WW32 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB4Q8WW32 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB4Q8WW32 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB4Q8WW32 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.91■■□□□ 1.42
HMGB4Q8WW32 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.91■■□□□ 1.42
HMGB4Q8WW32 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.91■■□□□ 1.42
HMGB4Q8WW32 MTDHP2-201ENST00000601468 714 ntBASIC23.91■■□□□ 1.42
HMGB4Q8WW32 AC011551.1-201ENST00000614101 683 ntBASIC23.91■■□□□ 1.42
HMGB4Q8WW32 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB4Q8WW32 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB4Q8WW32 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.9■■□□□ 1.42
HMGB4Q8WW32 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.9■■□□□ 1.42
HMGB4Q8WW32 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
HMGB4Q8WW32 AC142086.6-201ENST00000621154 1765 ntBASIC23.9■■□□□ 1.42
HMGB4Q8WW32 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.9■■□□□ 1.42
HMGB4Q8WW32 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.89■■□□□ 1.42
HMGB4Q8WW32 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC23.89■■□□□ 1.41
HMGB4Q8WW32 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.89■■□□□ 1.41
HMGB4Q8WW32 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.89■■□□□ 1.41
HMGB4Q8WW32 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGB4Q8WW32 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB4Q8WW32 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB4Q8WW32 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGB4Q8WW32 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.88■■□□□ 1.41
HMGB4Q8WW32 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.88■■□□□ 1.41
HMGB4Q8WW32 MIR638-201ENST00000385237 100 ntBASIC23.88■■□□□ 1.41
HMGB4Q8WW32 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.88■■□□□ 1.41
HMGB4Q8WW32 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.88■■□□□ 1.41
HMGB4Q8WW32 AL117332.1-201ENST00000622628 974 ntBASIC23.88■■□□□ 1.41
HMGB4Q8WW32 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.87■■□□□ 1.41
HMGB4Q8WW32 AL136116.3-201ENST00000402907 1138 ntBASIC23.87■■□□□ 1.41
HMGB4Q8WW32 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.87■■□□□ 1.41
HMGB4Q8WW32 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.87■■□□□ 1.41
HMGB4Q8WW32 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.87■■□□□ 1.41
HMGB4Q8WW32 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
HMGB4Q8WW32 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.87■■□□□ 1.41
HMGB4Q8WW32 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
HMGB4Q8WW32 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
HMGB4Q8WW32 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB4Q8WW32 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
HMGB4Q8WW32 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.86■■□□□ 1.41
HMGB4Q8WW32 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.86■■□□□ 1.41
HMGB4Q8WW32 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
HMGB4Q8WW32 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.86■■□□□ 1.41
HMGB4Q8WW32 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.86■■□□□ 1.41
HMGB4Q8WW32 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
HMGB4Q8WW32 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HMGB4Q8WW32 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HMGB4Q8WW32 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
HMGB4Q8WW32 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms