Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.45■■□□□ 1.66
DDX53Q86TM3 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC25.45■■□□□ 1.66
DDX53Q86TM3 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
DDX53Q86TM3 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
DDX53Q86TM3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
DDX53Q86TM3 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.44■■□□□ 1.66
DDX53Q86TM3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.44■■□□□ 1.66
DDX53Q86TM3 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC25.44■■□□□ 1.66
DDX53Q86TM3 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.44■■□□□ 1.66
DDX53Q86TM3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
DDX53Q86TM3 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.44■■□□□ 1.66
DDX53Q86TM3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
DDX53Q86TM3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
DDX53Q86TM3 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
DDX53Q86TM3 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
DDX53Q86TM3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.43■■□□□ 1.66
DDX53Q86TM3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
DDX53Q86TM3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
DDX53Q86TM3 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
DDX53Q86TM3 AC142086.6-201ENST00000621154 1765 ntBASIC25.42■■□□□ 1.66
DDX53Q86TM3 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC25.42■■□□□ 1.66
DDX53Q86TM3 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.42■■□□□ 1.66
DDX53Q86TM3 AC011551.1-201ENST00000614101 683 ntBASIC25.42■■□□□ 1.66
DDX53Q86TM3 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.42■■□□□ 1.66
DDX53Q86TM3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
DDX53Q86TM3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.41■■□□□ 1.66
DDX53Q86TM3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
DDX53Q86TM3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.41■■□□□ 1.66
DDX53Q86TM3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.41■■□□□ 1.66
DDX53Q86TM3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
DDX53Q86TM3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
DDX53Q86TM3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
DDX53Q86TM3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.39■■□□□ 1.66
DDX53Q86TM3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.39■■□□□ 1.66
DDX53Q86TM3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.39■■□□□ 1.66
DDX53Q86TM3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
DDX53Q86TM3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
DDX53Q86TM3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
DDX53Q86TM3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
DDX53Q86TM3 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.37■■□□□ 1.65
DDX53Q86TM3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
DDX53Q86TM3 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
DDX53Q86TM3 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.37■■□□□ 1.65
DDX53Q86TM3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC25.37■■□□□ 1.65
DDX53Q86TM3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.36■■□□□ 1.65
DDX53Q86TM3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
DDX53Q86TM3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.36■■□□□ 1.65
DDX53Q86TM3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
DDX53Q86TM3 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
DDX53Q86TM3 AC010997.5-201ENST00000609182 354 ntBASIC25.35■■□□□ 1.65
DDX53Q86TM3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.35■■□□□ 1.65
DDX53Q86TM3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
DDX53Q86TM3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.35■■□□□ 1.65
DDX53Q86TM3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
DDX53Q86TM3 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.34■■□□□ 1.65
DDX53Q86TM3 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
DDX53Q86TM3 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
DDX53Q86TM3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.33■■□□□ 1.65
DDX53Q86TM3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.33■■□□□ 1.65
DDX53Q86TM3 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.33■■□□□ 1.65
DDX53Q86TM3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
DDX53Q86TM3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.33■■□□□ 1.64
DDX53Q86TM3 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
DDX53Q86TM3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
DDX53Q86TM3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.32■■□□□ 1.64
DDX53Q86TM3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
DDX53Q86TM3 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.32■■□□□ 1.64
DDX53Q86TM3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.32■■□□□ 1.64
DDX53Q86TM3 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.32■■□□□ 1.64
DDX53Q86TM3 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.32■■□□□ 1.64
DDX53Q86TM3 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.32■■□□□ 1.64
DDX53Q86TM3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.31■■□□□ 1.64
DDX53Q86TM3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
DDX53Q86TM3 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.31■■□□□ 1.64
DDX53Q86TM3 AC131281.2-201ENST00000520478 145 ntBASIC25.31■■□□□ 1.64
DDX53Q86TM3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.31■■□□□ 1.64
DDX53Q86TM3 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.31■■□□□ 1.64
DDX53Q86TM3 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
DDX53Q86TM3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC25.3■■□□□ 1.64
DDX53Q86TM3 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.3■■□□□ 1.64
DDX53Q86TM3 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
DDX53Q86TM3 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.3■■□□□ 1.64
DDX53Q86TM3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
DDX53Q86TM3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
DDX53Q86TM3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.3■■□□□ 1.64
DDX53Q86TM3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.29■■□□□ 1.64
DDX53Q86TM3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
DDX53Q86TM3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC25.29■■□□□ 1.64
DDX53Q86TM3 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.29■■□□□ 1.64
DDX53Q86TM3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.29■■□□□ 1.64
DDX53Q86TM3 MTDHP2-201ENST00000601468 714 ntBASIC25.29■■□□□ 1.64
DDX53Q86TM3 MIR6724-1-201ENST00000616420 92 ntBASIC25.29■■□□□ 1.64
DDX53Q86TM3 MIR6724-2-201ENST00000616483 92 ntBASIC25.29■■□□□ 1.64
DDX53Q86TM3 MIR6724-4-201ENST00000617390 92 ntBASIC25.29■■□□□ 1.64
DDX53Q86TM3 MIR6724-3-201ENST00000622482 92 ntBASIC25.29■■□□□ 1.64
DDX53Q86TM3 AL117332.1-201ENST00000622628 974 ntBASIC25.29■■□□□ 1.64
DDX53Q86TM3 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.29■■□□□ 1.64
DDX53Q86TM3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
DDX53Q86TM3 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
DDX53Q86TM3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms