Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPS28P62857 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC14.04□□□□□ -0.16
RPS28P62857 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
RPS28P62857 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC14.04□□□□□ -0.16
RPS28P62857 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC14.04□□□□□ -0.16
RPS28P62857 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPS28P62857 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
RPS28P62857 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPS28P62857 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPS28P62857 LINC01124-201ENST00000409786 2117 ntBASIC14.03□□□□□ -0.16
RPS28P62857 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPS28P62857 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC14.03□□□□□ -0.16
RPS28P62857 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPS28P62857 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPS28P62857 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPS28P62857 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC14.03□□□□□ -0.16
RPS28P62857 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPS28P62857 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC14.02□□□□□ -0.16
RPS28P62857 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPS28P62857 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPS28P62857 FOXO3B-201ENST00000395675 1928 ntBASIC14.02□□□□□ -0.16
RPS28P62857 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPS28P62857 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPS28P62857 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPS28P62857 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPS28P62857 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPS28P62857 WWC2-AS2-201ENST00000578387 2183 ntBASIC14.02□□□□□ -0.17
RPS28P62857 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPS28P62857 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC14.02□□□□□ -0.17
RPS28P62857 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
RPS28P62857 AL137060.1-201ENST00000618151 2648 ntBASIC14.01□□□□□ -0.17
RPS28P62857 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPS28P62857 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPS28P62857 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPS28P62857 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPS28P62857 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC14.01□□□□□ -0.17
RPS28P62857 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPS28P62857 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPS28P62857 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPS28P62857 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC14□□□□□ -0.17
RPS28P62857 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC14□□□□□ -0.17
RPS28P62857 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14□□□□□ -0.17
RPS28P62857 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC14□□□□□ -0.17
RPS28P62857 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
RPS28P62857 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RPS28P62857 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC14□□□□□ -0.17
RPS28P62857 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC13.99□□□□□ -0.17
RPS28P62857 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC13.99□□□□□ -0.17
RPS28P62857 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC13.99□□□□□ -0.17
RPS28P62857 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
RPS28P62857 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RPS28P62857 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RPS28P62857 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RPS28P62857 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
RPS28P62857 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RPS28P62857 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
RPS28P62857 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RPS28P62857 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC13.99□□□□□ -0.17
RPS28P62857 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC13.98□□□□□ -0.17
RPS28P62857 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RPS28P62857 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RPS28P62857 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
RPS28P62857 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RPS28P62857 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RPS28P62857 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RPS28P62857 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RPS28P62857 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC13.98□□□□□ -0.17
RPS28P62857 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RPS28P62857 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC13.98□□□□□ -0.17
RPS28P62857 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RPS28P62857 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
RPS28P62857 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC13.97□□□□□ -0.17
RPS28P62857 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
RPS28P62857 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RPS28P62857 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
RPS28P62857 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC13.97□□□□□ -0.17
RPS28P62857 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RPS28P62857 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
RPS28P62857 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RPS28P62857 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC13.96□□□□□ -0.17
RPS28P62857 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
RPS28P62857 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
RPS28P62857 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC13.96□□□□□ -0.18
RPS28P62857 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RPS28P62857 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RPS28P62857 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RPS28P62857 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RPS28P62857 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
RPS28P62857 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
RPS28P62857 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms