Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC33.56■■■□□ 2.96
MSH6P52701 AC011551.1-201ENST00000614101 683 ntBASIC33.56■■■□□ 2.96
MSH6P52701 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC33.54■■■□□ 2.96
MSH6P52701 PARL-206ENST00000435888 1098 ntTSL 5 BASIC33.54■■■□□ 2.96
MSH6P52701 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC33.54■■■□□ 2.96
MSH6P52701 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC33.53■■■□□ 2.96
MSH6P52701 ANKRD20A6P-201ENST00000618763 204 ntBASIC33.53■■■□□ 2.96
MSH6P52701 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC33.53■■■□□ 2.96
MSH6P52701 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC33.52■■■□□ 2.96
MSH6P52701 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC33.52■■■□□ 2.96
MSH6P52701 UNC93B3-201ENST00000308076 687 ntBASIC33.52■■■□□ 2.96
MSH6P52701 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC33.52■■■□□ 2.96
MSH6P52701 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC33.52■■■□□ 2.96
MSH6P52701 CLTA-210ENST00000540080 989 ntTSL 2 BASIC33.52■■■□□ 2.96
MSH6P52701 AL136162.1-201ENST00000607711 1078 ntBASIC33.51■■■□□ 2.96
MSH6P52701 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC33.51■■■□□ 2.96
MSH6P52701 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC33.51■■■□□ 2.96
MSH6P52701 GAK-223ENST00000628912 497 ntTSL 5 BASIC33.51■■■□□ 2.96
MSH6P52701 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC33.5■■■□□ 2.95
MSH6P52701 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC33.5■■■□□ 2.95
MSH6P52701 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC33.49■■■□□ 2.95
MSH6P52701 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
MSH6P52701 TFPT-201ENST00000391757 774 ntTSL 5 BASIC33.49■■■□□ 2.95
MSH6P52701 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC33.49■■■□□ 2.95
MSH6P52701 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC33.49■■■□□ 2.95
MSH6P52701 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
MSH6P52701 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC33.48■■■□□ 2.95
MSH6P52701 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
MSH6P52701 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
MSH6P52701 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
MSH6P52701 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
MSH6P52701 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC33.47■■■□□ 2.95
MSH6P52701 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
MSH6P52701 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
MSH6P52701 EDA-201ENST00000338901 1233 ntBASIC33.47■■■□□ 2.95
MSH6P52701 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC33.47■■■□□ 2.95
MSH6P52701 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC33.47■■■□□ 2.95
MSH6P52701 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC33.46■■■□□ 2.95
MSH6P52701 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
MSH6P52701 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC33.46■■■□□ 2.95
MSH6P52701 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC33.46■■■□□ 2.95
MSH6P52701 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC33.46■■■□□ 2.95
MSH6P52701 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
MSH6P52701 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
MSH6P52701 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC33.46■■■□□ 2.95
MSH6P52701 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC33.46■■■□□ 2.95
MSH6P52701 AC105265.2-201ENST00000467189 838 ntBASIC33.46■■■□□ 2.95
MSH6P52701 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC33.45■■■□□ 2.94
MSH6P52701 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC33.45■■■□□ 2.94
MSH6P52701 HYI-206ENST00000372434 1025 ntTSL 5 BASIC33.44■■■□□ 2.94
MSH6P52701 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC33.44■■■□□ 2.94
MSH6P52701 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC33.44■■■□□ 2.94
MSH6P52701 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC33.44■■■□□ 2.94
MSH6P52701 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
MSH6P52701 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC33.43■■■□□ 2.94
MSH6P52701 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC33.43■■■□□ 2.94
MSH6P52701 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC33.43■■■□□ 2.94
MSH6P52701 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC33.42■■■□□ 2.94
MSH6P52701 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC33.42■■■□□ 2.94
MSH6P52701 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
MSH6P52701 MIR6821-201ENST00000617625 74 ntBASIC33.42■■■□□ 2.94
MSH6P52701 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
MSH6P52701 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC33.41■■■□□ 2.94
MSH6P52701 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC33.41■■■□□ 2.94
MSH6P52701 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC33.41■■■□□ 2.94
MSH6P52701 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC33.41■■■□□ 2.94
MSH6P52701 AL355001.2-201ENST00000620617 1191 ntBASIC33.41■■■□□ 2.94
MSH6P52701 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC33.41■■■□□ 2.94
MSH6P52701 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC33.4■■■□□ 2.94
MSH6P52701 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC33.4■■■□□ 2.94
MSH6P52701 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC33.4■■■□□ 2.94
MSH6P52701 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
MSH6P52701 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC33.4■■■□□ 2.94
MSH6P52701 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
MSH6P52701 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
MSH6P52701 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC33.39■■■□□ 2.94
MSH6P52701 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC33.39■■■□□ 2.94
MSH6P52701 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC33.39■■■□□ 2.93
MSH6P52701 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
MSH6P52701 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
MSH6P52701 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC33.38■■■□□ 2.93
MSH6P52701 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
MSH6P52701 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC33.38■■■□□ 2.93
MSH6P52701 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
MSH6P52701 AC024257.2-201ENST00000549699 147 ntBASIC33.37■■■□□ 2.93
MSH6P52701 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
MSH6P52701 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC33.37■■■□□ 2.93
MSH6P52701 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
MSH6P52701 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC33.36■■■□□ 2.93
MSH6P52701 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC33.36■■■□□ 2.93
MSH6P52701 ABCB10P1-201ENST00000614297 2181 ntBASIC33.36■■■□□ 2.93
MSH6P52701 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
MSH6P52701 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
MSH6P52701 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC33.34■■■□□ 2.93
MSH6P52701 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
MSH6P52701 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
MSH6P52701 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC33.34■■■□□ 2.93
MSH6P52701 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
MSH6P52701 AC097381.1-201ENST00000429019 1296 ntBASIC33.34■■■□□ 2.93
MSH6P52701 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC33.33■■■□□ 2.93
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms