Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC6A1P30531 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC6A1P30531 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC6A1P30531 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SLC6A1P30531 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC6A1P30531 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC6A1P30531 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC6A1P30531 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.42■□□□□ 0.86
SLC6A1P30531 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.42■□□□□ 0.86
SLC6A1P30531 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC6A1P30531 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.42■□□□□ 0.86
SLC6A1P30531 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC6A1P30531 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC6A1P30531 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC6A1P30531 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC6A1P30531 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SLC6A1P30531 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC6A1P30531 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.41■□□□□ 0.86
SLC6A1P30531 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC6A1P30531 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
SLC6A1P30531 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC6A1P30531 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC6A1P30531 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SLC6A1P30531 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
SLC6A1P30531 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC6A1P30531 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
SLC6A1P30531 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SLC6A1P30531 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC6A1P30531 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SLC6A1P30531 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.39■□□□□ 0.85
SLC6A1P30531 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC6A1P30531 AL117328.2-201ENST00000624617 1940 ntBASIC20.39■□□□□ 0.85
SLC6A1P30531 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC6A1P30531 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC6A1P30531 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.38■□□□□ 0.85
SLC6A1P30531 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC6A1P30531 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
SLC6A1P30531 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SLC6A1P30531 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
SLC6A1P30531 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.38■□□□□ 0.85
SLC6A1P30531 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SLC6A1P30531 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.38■□□□□ 0.85
SLC6A1P30531 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SLC6A1P30531 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC6A1P30531 C9orf163-202ENST00000624034 2573 ntBASIC20.38■□□□□ 0.85
SLC6A1P30531 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SLC6A1P30531 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SLC6A1P30531 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC6A1P30531 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.37■□□□□ 0.85
SLC6A1P30531 HLA-V-202ENST00000446817 847 ntBASIC20.37■□□□□ 0.85
SLC6A1P30531 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC6A1P30531 LINC01971-201ENST00000617888 1048 ntBASIC20.37■□□□□ 0.85
SLC6A1P30531 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SLC6A1P30531 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SLC6A1P30531 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC6A1P30531 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.36■□□□□ 0.85
SLC6A1P30531 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC6A1P30531 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC6A1P30531 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC6A1P30531 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SLC6A1P30531 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.36■□□□□ 0.85
SLC6A1P30531 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SLC6A1P30531 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.36■□□□□ 0.85
SLC6A1P30531 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SLC6A1P30531 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
SLC6A1P30531 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC6A1P30531 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC6A1P30531 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SLC6A1P30531 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC6A1P30531 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SLC6A1P30531 LINC00273-201ENST00000539813 1452 ntBASIC20.35■□□□□ 0.85
SLC6A1P30531 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
SLC6A1P30531 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC6A1P30531 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.34■□□□□ 0.85
SLC6A1P30531 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SLC6A1P30531 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SLC6A1P30531 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC6A1P30531 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.33■□□□□ 0.85
SLC6A1P30531 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC6A1P30531 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC6A1P30531 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC6A1P30531 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SLC6A1P30531 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.33■□□□□ 0.85
SLC6A1P30531 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.33■□□□□ 0.85
SLC6A1P30531 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SLC6A1P30531 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.32■□□□□ 0.84
SLC6A1P30531 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SLC6A1P30531 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC6A1P30531 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A1P30531 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A1P30531 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.32■□□□□ 0.84
SLC6A1P30531 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A1P30531 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC6A1P30531 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A1P30531 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A1P30531 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A1P30531 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SLC6A1P30531 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.31■□□□□ 0.84
SLC6A1P30531 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A1P30531 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms