Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC24.43■■□□□ 1.5
COL4A2P08572 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A2P08572 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC24.43■■□□□ 1.5
COL4A2P08572 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A2P08572 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
COL4A2P08572 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A2P08572 MTDHP2-201ENST00000601468 714 ntBASIC24.43■■□□□ 1.5
COL4A2P08572 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.43■■□□□ 1.5
COL4A2P08572 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A2P08572 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.43■■□□□ 1.5
COL4A2P08572 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
COL4A2P08572 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A2P08572 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
COL4A2P08572 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24.42■■□□□ 1.5
COL4A2P08572 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
COL4A2P08572 MIR3621-201ENST00000580529 85 ntBASIC24.42■■□□□ 1.5
COL4A2P08572 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A2P08572 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A2P08572 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.41■■□□□ 1.5
COL4A2P08572 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
COL4A2P08572 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A2P08572 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
COL4A2P08572 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A2P08572 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A2P08572 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A2P08572 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A2P08572 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A2P08572 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A2P08572 LSM4-201ENST00000252816 986 ntTSL 2 BASIC24.4■■□□□ 1.5
COL4A2P08572 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.4■■□□□ 1.5
COL4A2P08572 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A2P08572 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.4■■□□□ 1.5
COL4A2P08572 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A2P08572 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A2P08572 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC24.39■■□□□ 1.5
COL4A2P08572 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.39■■□□□ 1.5
COL4A2P08572 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.39■■□□□ 1.5
COL4A2P08572 AC010997.5-201ENST00000609182 354 ntBASIC24.39■■□□□ 1.5
COL4A2P08572 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL4A2P08572 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
COL4A2P08572 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
COL4A2P08572 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
COL4A2P08572 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.38■■□□□ 1.49
COL4A2P08572 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A2P08572 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.38■■□□□ 1.49
COL4A2P08572 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.38■■□□□ 1.49
COL4A2P08572 EXOG-217ENST00000630638 197 ntTSL 5 BASIC24.38■■□□□ 1.49
COL4A2P08572 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
COL4A2P08572 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.37■■□□□ 1.49
COL4A2P08572 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC24.37■■□□□ 1.49
COL4A2P08572 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.37■■□□□ 1.49
COL4A2P08572 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.36■■□□□ 1.49
COL4A2P08572 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.36■■□□□ 1.49
COL4A2P08572 RASSF1-AS1-201ENST00000629828 790 ntBASIC24.36■■□□□ 1.49
COL4A2P08572 AP004609.3-201ENST00000610705 1884 ntBASIC24.36■■□□□ 1.49
COL4A2P08572 AF131216.4-201ENST00000638924 1588 ntBASIC24.36■■□□□ 1.49
COL4A2P08572 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
COL4A2P08572 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.35■■□□□ 1.49
COL4A2P08572 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
COL4A2P08572 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.35■■□□□ 1.49
COL4A2P08572 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL4A2P08572 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL4A2P08572 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
COL4A2P08572 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC24.35■■□□□ 1.49
COL4A2P08572 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC24.35■■□□□ 1.49
COL4A2P08572 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL4A2P08572 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.34■■□□□ 1.49
COL4A2P08572 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
COL4A2P08572 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.34■■□□□ 1.49
COL4A2P08572 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL4A2P08572 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC24.34■■□□□ 1.49
COL4A2P08572 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL4A2P08572 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL4A2P08572 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.33■■□□□ 1.49
COL4A2P08572 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL4A2P08572 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL4A2P08572 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC24.32■■□□□ 1.48
COL4A2P08572 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL4A2P08572 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL4A2P08572 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC24.32■■□□□ 1.48
COL4A2P08572 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
COL4A2P08572 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.31■■□□□ 1.48
COL4A2P08572 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.31■■□□□ 1.48
COL4A2P08572 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL4A2P08572 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC24.3■■□□□ 1.48
COL4A2P08572 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL4A2P08572 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL4A2P08572 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.3■■□□□ 1.48
COL4A2P08572 AC096631.2-201ENST00000436136 790 ntBASIC24.3■■□□□ 1.48
COL4A2P08572 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
COL4A2P08572 AC139426.1-201ENST00000568218 2529 ntBASIC24.29■■□□□ 1.48
COL4A2P08572 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A2P08572 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.29■■□□□ 1.48
COL4A2P08572 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A2P08572 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.29■■□□□ 1.48
COL4A2P08572 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A2P08572 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
COL4A2P08572 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
COL4A2P08572 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.28■■□□□ 1.48
COL4A2P08572 SNX5-217ENST00000606557 1087 ntBASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms