Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HLA-DPB1P04440 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HLA-DPB1P04440 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HLA-DPB1P04440 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
HLA-DPB1P04440 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
HLA-DPB1P04440 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HLA-DPB1P04440 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
HLA-DPB1P04440 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HLA-DPB1P04440 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DPB1P04440 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HLA-DPB1P04440 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
HLA-DPB1P04440 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
HLA-DPB1P04440 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HLA-DPB1P04440 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HLA-DPB1P04440 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HLA-DPB1P04440 MIR4449-201ENST00000578365 66 ntBASIC21.18■□□□□ 0.98
HLA-DPB1P04440 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HLA-DPB1P04440 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
HLA-DPB1P04440 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.18■□□□□ 0.98
HLA-DPB1P04440 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HLA-DPB1P04440 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HLA-DPB1P04440 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HLA-DPB1P04440 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HLA-DPB1P04440 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HLA-DPB1P04440 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.17■□□□□ 0.98
HLA-DPB1P04440 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HLA-DPB1P04440 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HLA-DPB1P04440 AC097639.1-201ENST00000565519 1891 ntBASIC21.17■□□□□ 0.98
HLA-DPB1P04440 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
HLA-DPB1P04440 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
HLA-DPB1P04440 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
HLA-DPB1P04440 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DPB1P04440 AL359258.2-201ENST00000564063 1566 ntBASIC21.15■□□□□ 0.98
HLA-DPB1P04440 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DPB1P04440 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DPB1P04440 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DPB1P04440 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HLA-DPB1P04440 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.15■□□□□ 0.98
HLA-DPB1P04440 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DPB1P04440 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HLA-DPB1P04440 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DPB1P04440 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DPB1P04440 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DPB1P04440 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DPB1P04440 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DPB1P04440 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DPB1P04440 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.14■□□□□ 0.97
HLA-DPB1P04440 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.14■□□□□ 0.97
HLA-DPB1P04440 AC068473.5-201ENST00000616428 2072 ntBASIC21.14■□□□□ 0.97
HLA-DPB1P04440 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DPB1P04440 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
HLA-DPB1P04440 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.13■□□□□ 0.97
HLA-DPB1P04440 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.13■□□□□ 0.97
HLA-DPB1P04440 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DPB1P04440 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DPB1P04440 LINC00543-201ENST00000567234 1845 ntBASIC21.13■□□□□ 0.97
HLA-DPB1P04440 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
HLA-DPB1P04440 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DPB1P04440 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.13■□□□□ 0.97
HLA-DPB1P04440 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DPB1P04440 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DPB1P04440 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DPB1P04440 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
HLA-DPB1P04440 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DPB1P04440 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DPB1P04440 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DPB1P04440 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.12■□□□□ 0.97
HLA-DPB1P04440 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DPB1P04440 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DPB1P04440 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms