Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DQA1P01909 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
HLA-DQA1P01909 WHAMMP2-203ENST00000563942 1603 ntBASIC17.77■□□□□ 0.44
HLA-DQA1P01909 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DQA1P01909 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DQA1P01909 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DQA1P01909 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DQA1P01909 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DQA1P01909 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DQA1P01909 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
HLA-DQA1P01909 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC17.77■□□□□ 0.43
HLA-DQA1P01909 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.77■□□□□ 0.43
HLA-DQA1P01909 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
HLA-DQA1P01909 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DQA1P01909 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DQA1P01909 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
HLA-DQA1P01909 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DQA1P01909 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HLA-DQA1P01909 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HLA-DQA1P01909 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DQA1P01909 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DQA1P01909 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DQA1P01909 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DQA1P01909 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DQA1P01909 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DQA1P01909 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DQA1P01909 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.75■□□□□ 0.43
HLA-DQA1P01909 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HLA-DQA1P01909 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC17.74■□□□□ 0.43
HLA-DQA1P01909 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
HLA-DQA1P01909 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DQA1P01909 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DQA1P01909 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DQA1P01909 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HLA-DQA1P01909 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DQA1P01909 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DQA1P01909 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HLA-DQA1P01909 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DQA1P01909 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
HLA-DQA1P01909 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
HLA-DQA1P01909 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DQA1P01909 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.73■□□□□ 0.43
HLA-DQA1P01909 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HLA-DQA1P01909 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DQA1P01909 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DQA1P01909 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 DENR-202ENST00000455982 1052 ntTSL 5 BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DQA1P01909 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
HLA-DQA1P01909 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DQA1P01909 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.71■□□□□ 0.43
HLA-DQA1P01909 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC17.71■□□□□ 0.43
HLA-DQA1P01909 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DQA1P01909 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
HLA-DQA1P01909 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
HLA-DQA1P01909 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DQA1P01909 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DQA1P01909 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC17.7■□□□□ 0.42
HLA-DQA1P01909 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DQA1P01909 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DQA1P01909 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DQA1P01909 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC17.7■□□□□ 0.42
HLA-DQA1P01909 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HLA-DQA1P01909 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 SUZ12P1-203ENST00000578195 985 ntBASIC17.69■□□□□ 0.42
HLA-DQA1P01909 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
HLA-DQA1P01909 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC17.68■□□□□ 0.42
HLA-DQA1P01909 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC17.68■□□□□ 0.42
HLA-DQA1P01909 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQA1P01909 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQA1P01909 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HLA-DQA1P01909 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQA1P01909 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.67■□□□□ 0.42
HLA-DQA1P01909 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HLA-DQA1P01909 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.67■□□□□ 0.42
HLA-DQA1P01909 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms