Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 SNAI3-AS1-204ENST00000567997 2048 ntBASIC37.63■■■■□ 3.61
PCF11O94913 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC37.63■■■■□ 3.61
PCF11O94913 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC37.62■■■■□ 3.61
PCF11O94913 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC37.62■■■■□ 3.61
PCF11O94913 MIR4787-201ENST00000607364 84 ntBASIC37.62■■■■□ 3.61
PCF11O94913 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
PCF11O94913 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC37.61■■■■□ 3.61
PCF11O94913 AC137630.3-201ENST00000607245 391 ntBASIC37.61■■■■□ 3.61
PCF11O94913 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC37.61■■■■□ 3.61
PCF11O94913 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC37.6■■■■□ 3.61
PCF11O94913 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC37.6■■■■□ 3.61
PCF11O94913 AC008406.3-201ENST00000620001 1374 ntBASIC37.6■■■■□ 3.61
PCF11O94913 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
PCF11O94913 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC37.59■■■■□ 3.61
PCF11O94913 AC011551.1-201ENST00000614101 683 ntBASIC37.59■■■■□ 3.61
PCF11O94913 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC37.59■■■■□ 3.61
PCF11O94913 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC37.59■■■■□ 3.61
PCF11O94913 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
PCF11O94913 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC37.59■■■■□ 3.61
PCF11O94913 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
PCF11O94913 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC37.58■■■■□ 3.61
PCF11O94913 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC37.58■■■■□ 3.61
PCF11O94913 AC021242.3-201ENST00000607598 1377 ntBASIC37.57■■■■□ 3.6
PCF11O94913 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC37.56■■■■□ 3.6
PCF11O94913 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC37.56■■■■□ 3.6
PCF11O94913 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC37.56■■■■□ 3.6
PCF11O94913 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC37.56■■■■□ 3.6
PCF11O94913 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC37.56■■■■□ 3.6
PCF11O94913 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC37.56■■■■□ 3.6
PCF11O94913 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC37.55■■■■□ 3.6
PCF11O94913 KRT16P3-201ENST00000439127 1283 ntBASIC37.55■■■■□ 3.6
PCF11O94913 KRT125P-201ENST00000546827 989 ntBASIC37.55■■■■□ 3.6
PCF11O94913 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC37.55■■■■□ 3.6
PCF11O94913 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC37.55■■■■□ 3.6
PCF11O94913 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
PCF11O94913 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC37.55■■■■□ 3.6
PCF11O94913 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
PCF11O94913 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC37.54■■■■□ 3.6
PCF11O94913 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC37.54■■■■□ 3.6
PCF11O94913 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC37.53■■■■□ 3.6
PCF11O94913 SENP5-202ENST00000419026 973 ntTSL 3 BASIC37.53■■■■□ 3.6
PCF11O94913 AC096887.2-201ENST00000623443 1957 ntBASIC37.53■■■■□ 3.6
PCF11O94913 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC37.52■■■■□ 3.6
PCF11O94913 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC37.52■■■■□ 3.6
PCF11O94913 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC37.52■■■■□ 3.6
PCF11O94913 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC37.51■■■■□ 3.6
PCF11O94913 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC37.51■■■■□ 3.6
PCF11O94913 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC37.51■■■■□ 3.6
PCF11O94913 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC37.51■■■■□ 3.59
PCF11O94913 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC37.51■■■■□ 3.59
PCF11O94913 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC37.51■■■■□ 3.59
PCF11O94913 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC37.5■■■■□ 3.59
PCF11O94913 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC37.5■■■■□ 3.59
PCF11O94913 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
PCF11O94913 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC37.5■■■■□ 3.59
PCF11O94913 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
PCF11O94913 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC37.49■■■■□ 3.59
PCF11O94913 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC37.49■■■■□ 3.59
PCF11O94913 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC37.48■■■■□ 3.59
PCF11O94913 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC37.48■■■■□ 3.59
PCF11O94913 PKM-203ENST00000389093 2279 ntTSL 5 BASIC37.47■■■■□ 3.59
PCF11O94913 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
PCF11O94913 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC37.46■■■■□ 3.59
PCF11O94913 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC37.46■■■■□ 3.59
PCF11O94913 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC37.46■■■■□ 3.59
PCF11O94913 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC37.45■■■■□ 3.59
PCF11O94913 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC37.44■■■■□ 3.58
PCF11O94913 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC37.44■■■■□ 3.58
PCF11O94913 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC37.44■■■■□ 3.58
PCF11O94913 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC37.43■■■■□ 3.58
PCF11O94913 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC37.43■■■■□ 3.58
PCF11O94913 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC37.43■■■■□ 3.58
PCF11O94913 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC37.43■■■■□ 3.58
PCF11O94913 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC37.42■■■■□ 3.58
PCF11O94913 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC37.42■■■■□ 3.58
PCF11O94913 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC37.42■■■■□ 3.58
PCF11O94913 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC37.42■■■■□ 3.58
PCF11O94913 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC37.42■■■■□ 3.58
PCF11O94913 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC37.42■■■■□ 3.58
PCF11O94913 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC37.42■■■■□ 3.58
PCF11O94913 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC37.42■■■■□ 3.58
PCF11O94913 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC37.41■■■■□ 3.58
PCF11O94913 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC37.41■■■■□ 3.58
PCF11O94913 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC37.41■■■■□ 3.58
PCF11O94913 PEMT-206ENST00000435340 960 ntTSL 5 BASIC37.41■■■■□ 3.58
PCF11O94913 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC37.41■■■■□ 3.58
PCF11O94913 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC37.41■■■■□ 3.58
PCF11O94913 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC37.41■■■■□ 3.58
PCF11O94913 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC37.4■■■■□ 3.58
PCF11O94913 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
PCF11O94913 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC37.39■■■■□ 3.58
PCF11O94913 TSPY9P-201ENST00000440215 945 ntBASIC37.39■■■■□ 3.58
PCF11O94913 TSPY11P-201ENST00000442607 1045 ntBASIC37.39■■■■□ 3.58
PCF11O94913 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC37.39■■■■□ 3.58
PCF11O94913 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC37.39■■■■□ 3.58
PCF11O94913 ERN1-208ENST00000606895 2068 ntBASIC37.39■■■■□ 3.58
PCF11O94913 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
PCF11O94913 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC37.38■■■■□ 3.58
PCF11O94913 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC37.38■■■■□ 3.58
PCF11O94913 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC37.37■■■■□ 3.57
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms