Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.65
MSH5O43196 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC31.64■■■□□ 2.65
MSH5O43196 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
MSH5O43196 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC31.63■■■□□ 2.65
MSH5O43196 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
MSH5O43196 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC31.63■■■□□ 2.65
MSH5O43196 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
MSH5O43196 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
MSH5O43196 STK33P1-201ENST00000423835 1218 ntBASIC31.62■■■□□ 2.65
MSH5O43196 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC31.62■■■□□ 2.65
MSH5O43196 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
MSH5O43196 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
MSH5O43196 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC31.62■■■□□ 2.65
MSH5O43196 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC31.62■■■□□ 2.65
MSH5O43196 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
MSH5O43196 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC31.61■■■□□ 2.65
MSH5O43196 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
MSH5O43196 PEMT-206ENST00000435340 960 ntTSL 5 BASIC31.61■■■□□ 2.65
MSH5O43196 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
MSH5O43196 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.61■■■□□ 2.65
MSH5O43196 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.61■■■□□ 2.65
MSH5O43196 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
MSH5O43196 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.6■■■□□ 2.65
MSH5O43196 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
MSH5O43196 CREM-229ENST00000474362 1030 ntTSL 2 BASIC31.6■■■□□ 2.65
MSH5O43196 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC31.6■■■□□ 2.65
MSH5O43196 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.6■■■□□ 2.65
MSH5O43196 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
MSH5O43196 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.59■■■□□ 2.65
MSH5O43196 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.59■■■□□ 2.65
MSH5O43196 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
MSH5O43196 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC31.59■■■□□ 2.65
MSH5O43196 TK2-216ENST00000564917 1156 ntTSL 3 BASIC31.59■■■□□ 2.65
MSH5O43196 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
MSH5O43196 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
MSH5O43196 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
MSH5O43196 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
MSH5O43196 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
MSH5O43196 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC31.58■■■□□ 2.65
MSH5O43196 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.58■■■□□ 2.65
MSH5O43196 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
MSH5O43196 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
MSH5O43196 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
MSH5O43196 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
MSH5O43196 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC31.57■■■□□ 2.64
MSH5O43196 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
MSH5O43196 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.57■■■□□ 2.64
MSH5O43196 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
MSH5O43196 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
MSH5O43196 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.56■■■□□ 2.64
MSH5O43196 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
MSH5O43196 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC31.56■■■□□ 2.64
MSH5O43196 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC31.56■■■□□ 2.64
MSH5O43196 TMEM14EP-202ENST00000639378 1296 ntBASIC31.56■■■□□ 2.64
MSH5O43196 AP004833.2-201ENST00000532228 1454 ntBASIC31.55■■■□□ 2.64
MSH5O43196 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
MSH5O43196 Z92544.1-202ENST00000571933 1220 ntBASIC31.55■■■□□ 2.64
MSH5O43196 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC31.55■■■□□ 2.64
MSH5O43196 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
MSH5O43196 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
MSH5O43196 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC31.55■■■□□ 2.64
MSH5O43196 THRA-202ENST00000394121 2260 ntTSL 2 BASIC31.55■■■□□ 2.64
MSH5O43196 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC31.55■■■□□ 2.64
MSH5O43196 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
MSH5O43196 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC31.54■■■□□ 2.64
MSH5O43196 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC31.54■■■□□ 2.64
MSH5O43196 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
MSH5O43196 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC31.53■■■□□ 2.64
MSH5O43196 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.53■■■□□ 2.64
MSH5O43196 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
MSH5O43196 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC31.53■■■□□ 2.64
MSH5O43196 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC31.53■■■□□ 2.64
MSH5O43196 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
MSH5O43196 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
MSH5O43196 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC31.52■■■□□ 2.64
MSH5O43196 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
MSH5O43196 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
MSH5O43196 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
MSH5O43196 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
MSH5O43196 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC31.51■■■□□ 2.63
MSH5O43196 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC31.51■■■□□ 2.63
MSH5O43196 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC31.5■■■□□ 2.63
MSH5O43196 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC31.5■■■□□ 2.63
MSH5O43196 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC31.5■■■□□ 2.63
MSH5O43196 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC31.49■■■□□ 2.63
MSH5O43196 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
MSH5O43196 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
MSH5O43196 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC31.48■■■□□ 2.63
MSH5O43196 AC133561.1-201ENST00000568600 2415 ntBASIC31.48■■■□□ 2.63
MSH5O43196 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC31.48■■■□□ 2.63
MSH5O43196 KRT125P-201ENST00000546827 989 ntBASIC31.48■■■□□ 2.63
MSH5O43196 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC31.48■■■□□ 2.63
MSH5O43196 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC31.48■■■□□ 2.63
MSH5O43196 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
MSH5O43196 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
MSH5O43196 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC31.47■■■□□ 2.63
MSH5O43196 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
MSH5O43196 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
MSH5O43196 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
MSH5O43196 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms