Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
HLA-DRB4X5D2U9 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 HLA-A-202ENST00000376806 1854 ntBASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 ACE-204ENST00000428043 5120 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 CD63-210ENST00000550776 870 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 OR7E47P-204ENST00000575924 449 ntBASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 MIR4492-201ENST00000581627 80 ntBASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 CYB561-216ENST00000582297 897 ntTSL 3 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 SIGLEC29P-201ENST00000599873 1114 ntBASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 Z83851.2-201ENST00000609564 659 ntBASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DRB4X5D2U9 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 AC006538.1-201ENST00000567905 1585 ntBASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC12.46□□□□□ -0.42
HLA-DRB4X5D2U9 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 AC024909.3-201ENST00000611513 2257 ntBASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 CRYGEP-201ENST00000412192 528 ntBASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 CDK2AP2P3-201ENST00000422476 372 ntBASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 PMS2P1-201ENST00000431037 1228 ntBASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 STARD13-205ENST00000439831 945 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 VN2R19P-201ENST00000442399 1052 ntBASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 CXCL1P1-201ENST00000502804 216 ntBASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 AC079776.4-201ENST00000511039 504 ntBASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DRB4X5D2U9 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms