Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SSU72Q9NP77 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 RCN1P1-201ENST00000400413 996 ntBASIC16.34■□□□□ 0.21
SSU72Q9NP77 PTCHD3P3-201ENST00000403073 906 ntBASIC16.34■□□□□ 0.21
SSU72Q9NP77 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 AC012615.1-201ENST00000565797 1299 ntBASIC16.34■□□□□ 0.21
SSU72Q9NP77 AC139887.3-201ENST00000568585 713 ntBASIC16.34■□□□□ 0.21
SSU72Q9NP77 NKAPP1-205ENST00000585790 367 ntBASIC16.34■□□□□ 0.21
SSU72Q9NP77 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 AC004706.3-202ENST00000621574 984 ntBASIC16.34■□□□□ 0.21
SSU72Q9NP77 AC116407.4-201ENST00000623319 1061 ntBASIC16.34■□□□□ 0.21
SSU72Q9NP77 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.34■□□□□ 0.21
SSU72Q9NP77 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSU72Q9NP77 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SSU72Q9NP77 PI4KAP1-204ENST00000612579 1703 ntBASIC16.33■□□□□ 0.21
SSU72Q9NP77 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.33■□□□□ 0.21
SSU72Q9NP77 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.33■□□□□ 0.21
SSU72Q9NP77 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
SSU72Q9NP77 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.33■□□□□ 0.21
SSU72Q9NP77 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
SSU72Q9NP77 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.33■□□□□ 0.21
SSU72Q9NP77 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SSU72Q9NP77 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
SSU72Q9NP77 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SSU72Q9NP77 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.33■□□□□ 0.21
SSU72Q9NP77 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 AL591684.3-201ENST00000605187 298 ntBASIC16.33■□□□□ 0.2
SSU72Q9NP77 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 AL805961.1-202ENST00000641562 540 ntBASIC16.33■□□□□ 0.2
SSU72Q9NP77 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.33■□□□□ 0.2
SSU72Q9NP77 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSU72Q9NP77 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms