Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 DRAXINP1-201ENST00000437611 948 ntBASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 AP000867.3-201ENST00000524675 377 ntBASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 TPSP2-201ENST00000561760 610 ntBASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 COPE-211ENST00000600932 1144 ntTSL 5 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 AC114341.1-201ENST00000618070 349 ntBASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 CDV3-207ENST00000508481 661 ntTSL 3 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 FAM86EP-206ENST00000510506 987 ntBASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 DBP-204ENST00000599385 709 ntTSL 3 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CHMP1AQ9HD42 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 IER3-202ENST00000376377 1350 ntBASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 AC144831.1-201ENST00000573312 2656 ntBASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 AC126177.1-201ENST00000547829 2218 ntBASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 POM121L3P-201ENST00000419331 1163 ntBASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 PCED1CP-201ENST00000419887 785 ntBASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 LINC00982-205ENST00000420957 435 ntBASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms