Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 AC092850.2-201ENST00000623821 2697 ntBASIC14.44□□□□□ -0.1
NKX3-1Q99801 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 AC091304.2-201ENST00000564639 760 ntBASIC14.44□□□□□ -0.1
NKX3-1Q99801 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 AL591684.3-201ENST00000605187 298 ntBASIC14.44□□□□□ -0.1
NKX3-1Q99801 AL121772.3-201ENST00000610840 674 ntBASIC14.44□□□□□ -0.1
NKX3-1Q99801 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.44□□□□□ -0.1
NKX3-1Q99801 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NKX3-1Q99801 GGT4P-201ENST00000623672 1708 ntBASIC14.44□□□□□ -0.1
NKX3-1Q99801 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 AP005117.1-201ENST00000584346 1413 ntBASIC14.43□□□□□ -0.1
NKX3-1Q99801 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 COX5A-204ENST00000567270 579 ntTSL 3 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 NKAPP1-205ENST00000585790 367 ntBASIC14.43□□□□□ -0.1
NKX3-1Q99801 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.43□□□□□ -0.1
NKX3-1Q99801 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NKX3-1Q99801 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 AC004870.1-201ENST00000315132 882 ntBASIC14.42□□□□□ -0.1
NKX3-1Q99801 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 POM121L3P-201ENST00000419331 1163 ntBASIC14.42□□□□□ -0.1
NKX3-1Q99801 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms