Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.83■□□□□ 0.6
USP28Q96RU2 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.83■□□□□ 0.6
USP28Q96RU2 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USP28Q96RU2 AL031432.2-201ENST00000566714 459 ntBASIC18.83■□□□□ 0.6
USP28Q96RU2 AL928711.1-201ENST00000570165 459 ntBASIC18.83■□□□□ 0.6
USP28Q96RU2 MIR3909-201ENST00000579518 119 ntBASIC18.83■□□□□ 0.6
USP28Q96RU2 AC021097.1-201ENST00000607902 574 ntBASIC18.83■□□□□ 0.6
USP28Q96RU2 AL645728.2-201ENST00000641974 660 ntBASIC18.83■□□□□ 0.6
USP28Q96RU2 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
USP28Q96RU2 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
USP28Q96RU2 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP28Q96RU2 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP28Q96RU2 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.83■□□□□ 0.6
USP28Q96RU2 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP28Q96RU2 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
USP28Q96RU2 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.82■□□□□ 0.6
USP28Q96RU2 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 RNA5SP415-201ENST00000517246 115 ntBASIC18.82■□□□□ 0.6
USP28Q96RU2 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 IGHV3-22-201ENST00000520721 359 ntBASIC18.82■□□□□ 0.6
USP28Q96RU2 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.82■□□□□ 0.6
USP28Q96RU2 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.82■□□□□ 0.6
USP28Q96RU2 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.82■□□□□ 0.6
USP28Q96RU2 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
USP28Q96RU2 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP28Q96RU2 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP28Q96RU2 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USP28Q96RU2 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
USP28Q96RU2 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
USP28Q96RU2 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.81■□□□□ 0.6
USP28Q96RU2 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
USP28Q96RU2 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.81■□□□□ 0.6
USP28Q96RU2 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USP28Q96RU2 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.81■□□□□ 0.6
USP28Q96RU2 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
USP28Q96RU2 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.81■□□□□ 0.6
USP28Q96RU2 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
USP28Q96RU2 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.81■□□□□ 0.6
USP28Q96RU2 SLC25A6P4-201ENST00000586535 553 ntBASIC18.81■□□□□ 0.6
USP28Q96RU2 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
USP28Q96RU2 AC010507.1-201ENST00000633895 436 ntBASIC18.81■□□□□ 0.6
USP28Q96RU2 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.81■□□□□ 0.6
USP28Q96RU2 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP28Q96RU2 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.81■□□□□ 0.6
USP28Q96RU2 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP28Q96RU2 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP28Q96RU2 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
USP28Q96RU2 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.8■□□□□ 0.6
USP28Q96RU2 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
USP28Q96RU2 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.8■□□□□ 0.6
USP28Q96RU2 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP28Q96RU2 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USP28Q96RU2 PMS2P4-201ENST00000412466 1052 ntBASIC18.8■□□□□ 0.6
USP28Q96RU2 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.8■□□□□ 0.6
USP28Q96RU2 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.8■□□□□ 0.6
USP28Q96RU2 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.8■□□□□ 0.6
USP28Q96RU2 PRAL-201ENST00000624952 3286 ntBASIC18.8■□□□□ 0.6
USP28Q96RU2 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.8■□□□□ 0.6
USP28Q96RU2 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms