Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.81■□□□□ 0.44
CCDC42Q96M95 FGFR3P6-201ENST00000457012 610 ntBASIC17.81■□□□□ 0.44
CCDC42Q96M95 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 AC020765.3-201ENST00000613051 740 ntBASIC17.81■□□□□ 0.44
CCDC42Q96M95 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 AC006504.4-201ENST00000592118 1568 ntBASIC17.81■□□□□ 0.44
CCDC42Q96M95 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 PRAL-201ENST00000624952 3286 ntBASIC17.81■□□□□ 0.44
CCDC42Q96M95 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 AC104640.1-201ENST00000562617 2109 ntBASIC17.8■□□□□ 0.44
CCDC42Q96M95 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 AC112504.1-201ENST00000623415 1841 ntBASIC17.8■□□□□ 0.44
CCDC42Q96M95 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 SCARNA2-201ENST00000458748 420 ntBASIC17.8■□□□□ 0.44
CCDC42Q96M95 AC107918.2-201ENST00000530817 355 ntBASIC17.8■□□□□ 0.44
CCDC42Q96M95 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 AC005412.3-201ENST00000580309 715 ntBASIC17.8■□□□□ 0.44
CCDC42Q96M95 AC008608.2-201ENST00000606089 416 ntBASIC17.8■□□□□ 0.44
CCDC42Q96M95 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC42Q96M95 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC42Q96M95 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC42Q96M95 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC42Q96M95 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC42Q96M95 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 HCG4-201ENST00000418983 998 ntBASIC17.79■□□□□ 0.44
CCDC42Q96M95 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC42Q96M95 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC42Q96M95 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC42Q96M95 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC42Q96M95 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC42Q96M95 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC42Q96M95 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC42Q96M95 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 AC129492.6-201ENST00000611383 1305 ntBASIC17.78■□□□□ 0.44
CCDC42Q96M95 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms