Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS39Q96JC1 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS39Q96JC1 POU5F1P6-201ENST00000466990 990 ntBASIC16.56■□□□□ 0.24
VPS39Q96JC1 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS39Q96JC1 RNPS1P1-201ENST00000507437 918 ntBASIC16.56■□□□□ 0.24
VPS39Q96JC1 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.56■□□□□ 0.24
VPS39Q96JC1 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS39Q96JC1 AC008735.5-201ENST00000623544 497 ntBASIC16.56■□□□□ 0.24
VPS39Q96JC1 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS39Q96JC1 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS39Q96JC1 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
VPS39Q96JC1 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS39Q96JC1 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS39Q96JC1 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS39Q96JC1 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.56■□□□□ 0.24
VPS39Q96JC1 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS39Q96JC1 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 RPS2P28-201ENST00000314255 741 ntBASIC16.55■□□□□ 0.24
VPS39Q96JC1 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 KRT18P56-201ENST00000507275 550 ntBASIC16.55■□□□□ 0.24
VPS39Q96JC1 IGHV3-65-201ENST00000523210 341 ntBASIC16.55■□□□□ 0.24
VPS39Q96JC1 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 TP73-AS1-207ENST00000624167 988 ntBASIC16.55■□□□□ 0.24
VPS39Q96JC1 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 AL603832.2-201ENST00000566195 2125 ntBASIC16.55■□□□□ 0.24
VPS39Q96JC1 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS39Q96JC1 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS39Q96JC1 REXO1L8P-201ENST00000604378 1897 ntBASIC16.54■□□□□ 0.24
VPS39Q96JC1 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.54■□□□□ 0.24
VPS39Q96JC1 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 AF186996.4-201ENST00000467186 377 ntBASIC16.54■□□□□ 0.24
VPS39Q96JC1 UNC93B7-201ENST00000509439 705 ntBASIC16.54■□□□□ 0.24
VPS39Q96JC1 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 AC105339.3-201ENST00000560043 636 ntBASIC16.54■□□□□ 0.24
VPS39Q96JC1 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 AL356488.2-201ENST00000602755 427 ntBASIC16.54■□□□□ 0.24
VPS39Q96JC1 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.54■□□□□ 0.24
VPS39Q96JC1 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS39Q96JC1 AC010654.1-201ENST00000615722 808 ntBASIC16.54■□□□□ 0.24
VPS39Q96JC1 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 AC005593.1-201ENST00000624894 515 ntBASIC16.54■□□□□ 0.24
VPS39Q96JC1 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS39Q96JC1 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms