Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 AC074386.1-202ENST00000463561 864 ntBASIC14.62□□□□□ -0.07
SKA3Q8IX90 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 PDPK2P-202ENST00000562415 1191 ntBASIC14.62□□□□□ -0.07
SKA3Q8IX90 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 AL031731.1-201ENST00000642131 2094 ntBASIC14.61□□□□□ -0.07
SKA3Q8IX90 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 FABP5-202ENST00000396359 986 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 PGAM5P1-201ENST00000518923 814 ntBASIC14.61□□□□□ -0.07
SKA3Q8IX90 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 AC040169.1-201ENST00000565382 521 ntBASIC14.61□□□□□ -0.07
SKA3Q8IX90 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 AL031055.1-201ENST00000606362 631 ntBASIC14.61□□□□□ -0.07
SKA3Q8IX90 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.61□□□□□ -0.07
SKA3Q8IX90 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SKA3Q8IX90 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 PMS2P4-201ENST00000412466 1052 ntBASIC14.6□□□□□ -0.07
SKA3Q8IX90 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms