Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
SYNE3Q6ZMZ3 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.39■□□□□ 0.7
SYNE3Q6ZMZ3 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.39■□□□□ 0.7
SYNE3Q6ZMZ3 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.39■□□□□ 0.7
SYNE3Q6ZMZ3 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 AC006449.5-201ENST00000610658 2098 ntBASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 DOC2GP-204ENST00000639052 2548 ntBASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 ME2P1-201ENST00000426028 1970 ntBASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE3Q6ZMZ3 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 FAM58CP-201ENST00000435741 640 ntBASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 AC091812.2-201ENST00000619081 385 ntBASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE3Q6ZMZ3 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 WASH6P-202ENST00000359512 1437 ntBASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 DNAJB3-201ENST00000446806 729 ntBASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.37■□□□□ 0.69
SYNE3Q6ZMZ3 AL078644.1-201ENST00000609881 752 ntBASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms